Gene detail

Detailed information of g19002.t1 in Acropora digitifera

Genomic Location: chr9Alt:1395994...1407828
NR annotation: XP_015769202.1, PREDICTED: flotillin-2a-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14254	Flotillin-2 OS=Homo sapiens OX=9606 GN=FLOT2 PE=1 SV=2
O61492	Flotillin-2 OS=Drosophila melanogaster OX=7227 GN=Flo2 PE=2 SV=3
Q60634	Flotillin-2 OS=Mus musculus OX=10090 GN=Flot2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01145 all species →	Band_7	SPFH domain / Band 7 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001107 all species →	Domain	Band 7 domain	Interproscan
IPR036013 all species →	Homologous_superfamily	Band 7/SPFH domain superfamily	Interproscan
IPR027705 all species →	Family	Flotillin family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13806 all species →	FLOTILLIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016600 all species →	Cellular Component	flotillin complex	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0045661 all species →	Biological Process	regulation of myoblast differentiation	Interproscan
GO:0072659 all species →	Biological Process	protein localization to plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07192	FLOT; flotillin	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g19002.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

344.3Max TPM

266.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	266.94	344.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	344.27
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	333.52
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	325.97
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	314.94
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	306.66
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	300.86
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	289.74
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	288.44
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	281.56
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	281.27
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	277.79
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	276.96
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	276.40
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	274.51
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	271.40
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	269.64
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	268.53
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	266.57
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	262.39
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	259.77
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	257.18
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	256.44
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	254.62
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	253.65
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	253.65
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	252.45
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	251.50
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	250.57
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	248.09
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	247.98
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	242.39
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	239.38
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	238.58
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	238.42
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	237.82
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	234.21
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	232.07
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	231.29
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	219.11

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.