Genomic Location: not available for this species
NR annotation: XP_047124632.1, V-type proton ATPase subunit C [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q7T385 | V-type proton ATPase subunit C 1-A OS=Danio rerio OX=7955 GN=atp6v1c1a PE=2 SV=1 |
| Q5XIY6 | V-type proton ATPase subunit C 1-B OS=Danio rerio OX=7955 GN=atp6v1c1b PE=2 SV=1 |
| P21282 | V-type proton ATPase subunit C 1 OS=Bos taurus OX=9913 GN=ATP6V1C1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005284 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0007510 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0024419 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF15372 all species → | DUF4600 | Domain of unknown function (DUF4600) | Family | Interproscan |
| PF03223 all species → | V-ATPase_C | V-ATPase subunit C | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013087 all species → | Domain | Zinc finger C2H2-type | Interproscan |
| IPR036236 all species → | Homologous_superfamily | Zinc finger C2H2 superfamily | Interproscan |
| IPR028022 all species → | Family | Protein of unknown function DUF4600 | Interproscan |
| IPR004907 all species → | Family | ATPase, V1 complex, subunit C | Interproscan |
| IPR036132 all species → | Homologous_superfamily | Vacuolar ATP synthase subunit C superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR28671 all species → | COILED-COIL DOMAIN-CONTAINING PROTEIN 169 | Interproscan |
| PTHR10137 all species → | V-TYPE PROTON ATPASE SUBUNIT C | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0033180 all species → | Cellular Component | proton-transporting V-type ATPase, V1 domain | Interproscan |
| GO:0046961 all species → | Molecular Function | proton-transporting ATPase activity, rotational mechanism | Interproscan |
| GO:1902600 all species → | Biological Process | proton transmembrane transport | Interproscan |
| GO:0015078 all species → | Molecular Function | proton transmembrane transporter activity | Interproscan |
| GO:0000221 all species → | Cellular Component | vacuolar proton-transporting V-type ATPase, V1 domain | Interproscan |
| GO:0005765 all species → | Cellular Component | lysosomal membrane | Interproscan |
g1902.t1.Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
