Gene detail

Detailed information of g19042.t1.1 in Haliclystus octoradiatus

Genomic Location: :...
NR annotation: XP_047126896.1, cyclic nucleotide-gated cation channel alpha-3 isoform X3 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

g19042.t1

ATGCAGTATGATTCGATGTCTGATGTCGCCAGCCGTATTTTGAAACAGCGGGATAATAACATCACTTCAAAATGTATTGACTGCGTTGATCCTCTATCCAATCGTAGTCAAATGAAAGTCAATGAAAACATAACAGGGCAAGAAACATCATCAGTGTCTTCTCAGCATTTTGACCAAActgatataaataaaatggCTATGAATGATAACAAATGGCATGTACTATCGAGAAGGCTAAGAAATATGGTCGCTGCTAAAAATGCTATTGTTGAACCTGCTATGACAAAAAAATTAGCAATTGAGCAAAAAGATACATTTCTGGAACGCTTCAGCACAAGAGATACTTCTTATTCACAAAATTCAAGACCGATACCAGGGGTTTCTCGTGCTACGAAAAACAATGGTAGAATTCCCTTGAATTCATTTTATATTGGGAATAAATCACCACGACCAGAAAATAGCACTAAATGCGTTTTACAGTTAGATGTTGTGCCTAGACAAGATAATAATACACCTTTATCGACAGTAAGTGAAGAAATATCGAATAATGTAGCAACAAAAGTTGGGTTCGTTAAAGATAATTTCAAAGACAAGCTCTggtataattattttgatattgcatGGAATTGGATAATTGAGCCATATAGCACATTTGCATATATTTGGCATTATTTCTTAATCGTTGCTATCCATTATAACTGTTGGGCGTTACCATTAAGACTTGCATTCACATCAACACAAGAAGAATTTGTGTATGGCTGGTTATGTTTTGATTACATCTTTGATTTTATATACTTgttagatatttttatttgtacaaGGACATCATACTTACTTAATGGTATCTATGTCGATGAGAAAAaactgatgttttccaaatatgcaaaatcattatattttgtattggACATTATAGCATTACTGCCTTACGATATTTTTTATGCGTGGAGAGGGATTTCTCCTATTTGGCGTTTACCACGTTTAATCAAGTTGTATAAAATCATCAAAGCAAAGTTAATCATTGAATCAGTTACTACATTTACTAATGTTGTTCGTGCCTTATTTCTAGTTCATTTAGTGTTCTTACTAATACATTGGAATGCTTGcttttattttatgatttctaAAAGAGAAGGATTTGGTAATAATACTTGGGTTTATCCAATGTTAAATGGAATTCATTCTCAAACACATCATCAATATGTACATTGTTTATATTGGTCAACACTTGCTCTCACAACTATTGGGGAATCAAATGGCCCTGTCACTACTGAATCgaACATTTATATGATTGTATGTTATATCACTGgagtatttatttttgcaaCTATTGTGGGTCAAGCAGGTAGTGttattcaaaacatgaatTCCTCAAGAATGGATTTTGAAAGACAAAGGGACAATACAATGATATACATGAAGGATCATCGTGTACCAAGTGACATGCAACGTAGAGTTCGTCTGTGGTATGATTACACATATTCGAGAGGTCGATTCCAAGGTGGTGCTGACATCAATGATGTAATTTTAttaccaaataaaatgaagaCAGAACTTGCTTTACACGTTCATTTGGAAACATTGAGACGGGTAACCTTTTTGCAGAAGTGTCCTCCAGAATTTCTCCATGATCTAgtgttaaaaatgaaaatgcatATATTCACTCCAGGAGATTACATATGTAAGAAAGGTGAAGTCGCCCGTGAGATGTATGTTGTCAGTGATGGAATTCTTGAGGTATTAAGtgaaaatcaaaatatactcAAAGTTCTTTATCCTGGAGATTTCTTTGGTGAAATTGGAATTCTATCTTTGAGTGAAGGTCAAAACAGACGTACAGCAGATGTCCGCTCGTGTGGCTATGTTGAGCTATTTGTTCTTTCGAAAGAAGACGTACTTTCAGCTACAGTCGACTATCCACAAGCTCAAAAAATACTAGCCAAACATGGTCGTCGTAGATTAATGAAAGATGGAAAGAATAAATCTGGCCTACGAGATGCAACAAGCAGTGAATCAGAACCAGAAGTGATTGAGGATAAGAACGATGAAAAGAAAAAGACAGCGGAAATGAGTAAAAATAGAAACTCTGTTGATAGGGCATACCCATATATGAAAGTTTCAGATTTACACAAGAAAAGAATAGTCAATTGGCACGCAAGTGTTAAATCAGTCAATATGAATGAAAAAAGATTCAATAAATCCGATGAATTGAAAACTCTTCACATTGGGACAGGAATTAGATCTGCAATGGTATCATTTGTTAGCCCTGCTTTACCAATTGAagttaaagaaaataatagtaatttgGACAGTGAAACATCTGCTCACAATGAGGAACTATCTGCAACTGTATCCCctgattttgaagaatttcaaaGATTAGAATACAATTTGACTCGTTCAAATAAAGCTAATATTAAAACACCAGATACACATGATCACTTATTTGACGAAATATTTGAGCAAGCCCATAGTGAAGCAATCAAGtctctaaagagctatttcaAACGAAAACTTAAGAAAGAAATAGTATCTATTCGTATGCAATTGAGAGAGCAGAATGAAGTAAACAATGCACAGAAGAAAGAAATAGAGGAGCTGAAATTAAACTGTTCATGCACTAAAGTGAAATCGAAAACAAGAGGAATTGGACTCTCAGATAGAGAAATGCAAACAGAGCTGCAAAAGAAAAAGATAAGAATACAAGAGCTAGAAGCTTCAATTAAGGTGATAATTGCTTGCTAA

Transcript

g19042.t1

Protein

Uniprot

Uniprot term	Description
Q28279	Cyclic nucleotide-gated channel alpha-1 OS=Canis lupus familiaris OX=9615 GN=CNGA1 PE=2 SV=1
P29974	Cyclic nucleotide-gated channel alpha-1 OS=Mus musculus OX=10090 GN=Cnga1 PE=2 SV=2
Q62927	Cyclic nucleotide-gated channel alpha-1 OS=Rattus norvegicus OX=10116 GN=Cnga1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00027	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF00520	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050866	Family	Cyclic Nucleotide-Gated Cation Channel	Interproscan
IPR018490	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR000595	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR014710	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR018488	Conserved_site	Cyclic nucleotide-binding, conserved site	Interproscan
IPR005821	Domain	Ion transport domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45638	CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0044877	Molecular Function	protein-containing complex binding	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04950	CNGA3; cyclic nucleotide gated channel alpha 3	-	Ion channels	ko04040	deepkoala