Gene detail

Detailed information of g191.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH3115725.1, unnamed protein product [Pocillopora meandrina]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G5ECB2	Gamma-aminobutyric acid type B receptor subunit 2 OS=Caenorhabditis elegans OX=6239 GN=gbb-2 PE=1 SV=1
O75899	Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens OX=9606 GN=GABBR2 PE=1 SV=1
Q80T41	Gamma-aminobutyric acid type B receptor subunit 2 OS=Mus musculus OX=10090 GN=Gabbr2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000018 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000192 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001636 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002304 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002338 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003291 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004156 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005044 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008277 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0014471 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0042470 (this species only) · gene tree & orthology
Transcription factor family	zf-C2H2 · all TF in this species
Transcription factor family	NF-YA · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07705 all species →	CARDB	CARDB	Domain	Interproscan
PF06814 all species →	Lung_7-TM_R	Lung seven transmembrane receptor	Family	Interproscan
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF00003 all species →	7tm_3	7 transmembrane sweet-taste receptor of 3 GCPR	Domain	Interproscan
PF09763 all species →	Sec3_CC	Exocyst complex component Sec3, coiled-coil	Repeat	Interproscan
PF01259 all species →	SAICAR_synt	SAICAR synthetase	Family	Interproscan
PF02045 all species →	CBFB_NFYA	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR011635 all species →	Domain	CARDB domain	Interproscan
IPR038810 all species →	Family	Centlein	Interproscan
IPR009637 all species →	Family	Transmembrane protein GPR107/GPR108-like	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR002455 all species →	Family	GPCR family 3, GABA-B receptor	Interproscan
IPR017978 all species →	Domain	GPCR family 3, C-terminal	Interproscan
IPR017979 all species →	Conserved_site	GPCR, family 3, conserved site	Interproscan
IPR019160 all species →	Domain	Exocyst complex component Sec3, coiled-coil	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR018236 all species →	Conserved_site	SAICAR synthetase, conserved site	Interproscan
IPR028923 all species →	Domain	SAICAR synthetase/ADE2, N-terminal	Interproscan
IPR001289 all species →	Family	Nuclear transcription factor Y subunit A	Interproscan
IPR018362 all species →	Conserved_site	CCAAT-binding factor, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18957 all species →	CENTLEIN	Interproscan
PTHR21229 all species →	LUNG SEVEN TRANSMEMBRANE RECEPTOR	Interproscan
PTHR23164 all species →	EARLY ENDOSOME ANTIGEN 1	Interproscan
PTHR23226 all species →	ZINC FINGER AND SCAN DOMAIN-CONTAINING	Interproscan
PTHR10519 all species →	GABA-B RECEPTOR	Interproscan
PTHR16092 all species →	SEC3/SYNTAXIN-RELATED	Interproscan
PTHR47331 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR43700 all species →	PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE	Interproscan
PTHR12632 all species →	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0010457 all species →	Biological Process	centriole-centriole cohesion	Interproscan
GO:0033365 all species →	Biological Process	protein localization to organelle	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005545 all species →	Molecular Function	1-phosphatidylinositol binding	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0004965 all species →	Molecular Function	G protein-coupled GABA receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0007214 all species →	Biological Process	gamma-aminobutyric acid signaling pathway	Interproscan
GO:0038039 all species →	Cellular Component	G protein-coupled receptor heterodimeric complex	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0006893 all species →	Biological Process	Golgi to plasma membrane transport	Interproscan
GO:0004639 all species →	Molecular Function	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	Interproscan
GO:0006164 all species →	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006189 all species →	Biological Process	'de novo' IMP biosynthetic process	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016602 all species →	Cellular Component	CCAAT-binding factor complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01923	purC; phosphoribosylaminoimidazole-succinocarboxamide synthase	EC:6.3.2.6	Purine metabolism	ko00230	deepkoala
K08064	NFYA, HAP2; nuclear transcription factor Y, alpha	-	Transcription factors	ko03000	deepkoala
K12480	RABEP1; Rab GTPase-binding effector protein 1	-	Membrane trafficking	ko04131	deepkoala
K22985	GPR107; G protein-coupled receptor 107	-	G protein-coupled receptors	ko04030	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →