Detailed information of g1914.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_031573134.1, DNA ligase 4-like [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q90YB1DNA ligase 4 OS=Gallus gallus OX=9031 GN=LIG4 PE=2 SV=2
P49917DNA ligase 4 OS=Homo sapiens OX=9606 GN=LIG4 PE=1 SV=2
G3GTP0DNA ligase 4 OS=Cricetulus griseus OX=10029 GN=LIG4 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04679DNA_ligase_A_CATP dependent DNA ligase C terminal region FamilyInterproscan
PF07002CopineCopineFamilyInterproscan
PF00168C2C2 domainDomainInterproscan
PF09588YqaJYqaJ-like viral recombinase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR012309DomainDNA ligase, ATP-dependent, C-terminalInterproscan
IPR029710FamilyDNA ligase 4Interproscan
IPR035892Homologous_superfamilyC2 domain superfamilyInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR037768DomainCopine, C2B domainInterproscan
IPR010734DomainCopine, C-terminalInterproscan
IPR000008DomainC2 domainInterproscan
IPR045052FamilyCopineInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR011335Homologous_superfamilyRestriction endonuclease type II-likeInterproscan
IPR011604Homologous_superfamilyPD-(D/E)XK endonuclease-like domain superfamilyInterproscan
IPR019080DomainYqaJ viral recombinaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45997DNA LIGASE 4Interproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR10857COPINEInterproscan
PTHR39953RE54151PInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003910Molecular FunctionDNA ligase (ATP) activityInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005958Cellular ComponentDNA-dependent protein kinase-DNA ligase 4 complexInterproscan
GO:0006297Biological Processnucleotide-excision repair, DNA gap fillingInterproscan
GO:0006303Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan
GO:0032807Cellular ComponentDNA ligase IV complexInterproscan
GO:0051103Biological ProcessDNA ligation involved in DNA repairInterproscan
GO:0005544Molecular Functioncalcium-dependent phospholipid bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0071277Biological Processcellular response to calcium ionInterproscan

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