Gene detail

Detailed information of g192.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047139550.1, fructose-1,6-bisphosphatase 1 isoform X2 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SZB7	Fructose-1,6-bisphosphatase 1 OS=Bos taurus OX=9913 GN=FBP1 PE=2 SV=3
P00637	Fructose-1,6-bisphosphatase 1 OS=Oryctolagus cuniculus OX=9986 GN=FBP1 PE=1 SV=4
P09467	Fructose-1,6-bisphosphatase 1 OS=Homo sapiens OX=9606 GN=FBP1 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000631 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001175 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001573 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002304 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002861 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005451 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006108 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006260 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007666 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008945 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0015211 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF00026 all species →	Asp	Eukaryotic aspartyl protease	Family	Interproscan
PF00230 all species →	MIP	Major intrinsic protein	Family	Interproscan
PF20654 all species →	Sec3_C-term	Exocyst complex component Sec3, C-terminal	Repeat	Interproscan
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF18913 all species →	FBPase_C	Fructose-1-6-bisphosphatase, C-terminal domain	Domain	Interproscan
PF00316 all species →	FBPase	Fructose-1-6-bisphosphatase, N-terminal domain	Domain	Interproscan
PF02769 all species →	AIRS_C	AIR synthase related protein, C-terminal domain	Domain	Interproscan
PF00586 all species →	AIRS	AIR synthase related protein, N-terminal domain	Domain	Interproscan
PF03868 all species →	Ribosomal_L6e_N	Ribosomal protein L6, N-terminal domain	Domain	Interproscan
PF01159 all species →	Ribosomal_L6e	Ribosomal protein L6e	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00293 all species →	NUDIX	NUDIX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR033121 all species →	Domain	Peptidase family A1 domain	Interproscan
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR009119 all species →	Family	Beta-secretase BACE	Interproscan
IPR009120 all species →	Family	Beta-secretase BACE1	Interproscan
IPR001461 all species →	Family	Aspartic peptidase A1 family	Interproscan
IPR023271 all species →	Homologous_superfamily	Aquaporin-like	Interproscan
IPR000425 all species →	Family	Major intrinsic protein	Interproscan
IPR022357 all species →	Conserved_site	Major intrinsic protein, conserved site	Interproscan
IPR050363 all species →	Family	Major Intrinsic Protein/Aquaporin	Interproscan
IPR048628 all species →	Domain	Exocyst complex component Sec3, C-terminal	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR051068 all species →	Family	Major Facilitator Superfamily Domain-Containing Protein	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR044015 all species →	Domain	Fructose-1-6-bisphosphatase class 1, C-terminal	Interproscan
IPR000146 all species →	Family	Fructose-1,6-bisphosphatase class 1	Interproscan
IPR020548 all species →	Active_site	Fructose-1,6-bisphosphatase, active site	Interproscan
IPR028343 all species →	Family	Fructose-1,6-bisphosphatase	Interproscan
IPR033391 all species →	Domain	Fructose-1-6-bisphosphatase class I, N-terminal	Interproscan
IPR036676 all species →	Homologous_superfamily	PurM-like, C-terminal domain superfamily	Interproscan
IPR004733 all species →	Family	Phosphoribosylformylglycinamidine cyclo-ligase	Interproscan
IPR010918 all species →	Domain	PurM-like, C-terminal domain	Interproscan
IPR016188 all species →	Domain	PurM-like, N-terminal domain	Interproscan
IPR036921 all species →	Homologous_superfamily	PurM-like, N-terminal domain superfamily	Interproscan
IPR005568 all species →	Domain	Large ribosomal subunit protein uL6, N-terminal	Interproscan
IPR000915 all species →	Family	Large ribosomal subunit protein eL6	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR041997 all species →	Domain	Large ribosomal subunit protein eL6, KOW domain	Interproscan
IPR008991 all species →	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR000086 all species →	Domain	NUDIX hydrolase domain	Interproscan
IPR015797 all species →	Homologous_superfamily	NUDIX hydrolase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47978 all species →	-	Interproscan
PTHR47965 all species →	ASPARTYL PROTEASE-RELATED	Interproscan
PTHR43829 all species →	AQUAPORIN OR AQUAGLYCEROPORIN RELATED	Interproscan
PTHR16092 all species →	SEC3/SYNTAXIN-RELATED	Interproscan
PTHR23510 all species →	INNER MEMBRANE TRANSPORT PROTEIN YAJR	Interproscan
PTHR11556 all species →	FRUCTOSE-1,6-BISPHOSPHATASE-RELATED	Interproscan
PTHR10520 all species →	TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED	Interproscan
PTHR10715 all species →	60S RIBOSOMAL PROTEIN L6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006509 all species →	Biological Process	membrane protein ectodomain proteolysis	Interproscan
GO:0050435 all species →	Biological Process	amyloid-beta metabolic process	Interproscan
GO:0015267 all species →	Molecular Function	channel activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0006833 all species →	Biological Process	water transport	Interproscan
GO:0015250 all species →	Molecular Function	water channel activity	Interproscan
GO:0015254 all species →	Molecular Function	glycerol channel activity	Interproscan
GO:0015793 all species →	Biological Process	glycerol transmembrane transport	Interproscan
GO:0016323 all species →	Cellular Component	basolateral plasma membrane	Interproscan
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0006893 all species →	Biological Process	Golgi to plasma membrane transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005986 all species →	Biological Process	sucrose biosynthetic process	Interproscan
GO:0006000 all species →	Biological Process	fructose metabolic process	Interproscan
GO:0006002 all species →	Biological Process	fructose 6-phosphate metabolic process	Interproscan
GO:0006094 all species →	Biological Process	gluconeogenesis	Interproscan
GO:0030388 all species →	Biological Process	fructose 1,6-bisphosphate metabolic process	Interproscan
GO:0042132 all species →	Molecular Function	fructose 1,6-bisphosphate 1-phosphatase activity	Interproscan
GO:0042578 all species →	Molecular Function	phosphoric ester hydrolase activity	Interproscan
GO:0004641 all species →	Molecular Function	phosphoribosylformylglycinamidine cyclo-ligase activity	Interproscan
GO:0006189 all species →	Biological Process	'de novo' IMP biosynthetic process	Interproscan
GO:0004637 all species →	Molecular Function	phosphoribosylamine-glycine ligase activity	Interproscan
GO:0006164 all species →	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0046084 all species →	Biological Process	adenine biosynthetic process	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0002181 all species →	Biological Process	cytoplasmic translation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01933	purM; phosphoribosylformylglycinamidine cyclo-ligase	EC:6.3.3.1	Purine metabolism	ko00230	deepkoala
K02934	RP-L6e, RPL6; large subunit ribosomal protein L6e	-	Ribosome	ko03011	deepkoala
K03841	FBP, fbp; fructose-1,6-bisphosphatase I	EC:3.1.3.11	Exosome	ko04147	deepkoala
K04521	BACE1; beta-site APP-cleaving enzyme 1 (memapsin 2)	EC:3.4.23.46	Peptidases and inhibitors	ko01002	deepkoala
K07912	RAB24; Ras-related protein Rab-24	-	GTP-binding proteins	ko04031	deepkoala
K19983	EXOC1, SEC3; exocyst complex component 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →