Gene detail

Detailed information of g19301.t1 in Acropora digitifera

Genomic Location: chr9Alt:4498495...4510118
NR annotation: XP_029193389.2, LOW QUALITY PROTEIN: uncharacterized protein YMR196W-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g19301.t1

ATGTTAAAGAAACCGCTGAAGCGTCGAGGAACTATAGTAATAGAGCATAATTTGGCTGAGACAAATCGGCTTGCAGAAGATTCCAAAAGAGAAAAAAATTGGAAAAGATGGGGTCCGTATTTATCTGAGAGACAGTGGGGAACTGTGAGGGAAGATTATTCCTTGGATGGATCTTGCTGGGACTCTTTTCCCCATGACCATGCAAGATCACGTGCATACCGGTGGGGTGAAGATGGTTTACTGGGAATCACAGATCGCCAGTGTCGACTTTGCTTTGGATTGGCTCTGTGGAATGAAAAAGATCCCATTCTAAAGGAAAGACTCTTTGGTTTGACTGGAACTGAAGGTAACCATGGTGAAGATGTGAAGGAATGCTACTATTATCTTGACTCAACTCCAACTCACTCTTACATGAAAGCTCTTTACAAATATCCGCAAAATGAATATCCTTATAGCTGGCTAGTTAACGAAAATCGACGAAGATCTCGACAAGAACCTGAATTTGAATTGGAAGACACAGGTGTATTCAATGAAAGCCGTTACTGGGATATCTATGCTGAATATGCAAAGAACACTCCCAATGATATCCTCATACAGATAACCATAGCAAACCGGGGTCCAGAGACAGCACGACTCCATGTTTTGCCCACATTGTGGTTCCGTAACACATGGATCTGGGGCTGTAAACATGAGGGATGCACTCTGAAGGCAAGCATCAAACAGACAGGACCTGATTCAGTGGAATGCAAACATGAAACTTTAGGAAATTATCTTTTTGTTGTGGATGCTGGACCTAATGATGAGCTGCCAGAGTTGCTATTTACAGAGAATGAGACAAACTCTTCGCTTCTCTATGGCATAGAAAATTACACACCTTTTACAAAAGATGCATTTCACCGCTTCGTTATCCGTGGAGAAATTGATGCCGTAAGCGCCAAGAAAAAAGGTTCAAAAGTTGCACCTTACTACATAGTTGAAGTTCCTGCTGGTGAGGAATGTGTTCTCAGATGCCGACTTATGGCACAGGATGAAATTGTAACTAACCCATTTGCTGAAAGAAATTTTGGAGCAATAATGCAGAAACGACTCAAAGAAGCCAATGAATTCTATAAGGTTGCCATACCATCAAACCGACTGCTTATACAAACATCTCCAGAAGCACACCTATATTTTGCTTTCACTGAAAATTCAGATGCAATGGGAACAAGATGTGCCAAGTTTAGGCTTGAGGAACAGTTCATCGATGTGCGTTTGAAAATAGGCAAAGATTGTCTTCCAGCACATCGCATCGTTCTCGCAGCGAATAGTAATTACTTTTACGCCATGTTTACAAAAGCAATGAAGGAATCGAATCAAGAATTGATTGAATTAAAACAAAAAGGCATTTCAGCCGAGGTCTTGAAGATTATCCTGAATTCCATCTACGGCGAGGATCTACGGGTTAACGAGCACAATGCATTGGAAATTCTTGCCACTGCTGACCACCTTCAATTTACAAATGTTGTCCAAAAGTGCTGCGATTTCTTGGTAAGAGAATTTAAGAGGGTTCGATTTGATGTGCAAAGATATTGCCAGCTGATTGATGTAGCAGATACTCGGGCTCTTGGGGATCTAAAGGAGGCTGTCCAATACAGTGTGGCCACTAAGTTCCAGGACATTTGTCACAGCGAAGAATTCCTCTCGCAAATGAATGCAGATCAGTTGATTAGTATCCTCAAGCGAGATGACCTCTATGTCCCTTCAGAGACGTTTGTCTTCAAATCTGTAATGCGTTGGGTACATTACCGGAAGGAGGAGAGAATGCCATTTGCTGCAAAAGTGATTGACGCAGTTCGACTTGGTCTAGTGGATATTACAACACTTATTGAAGAACTCAACACAAAGGACTTCCAACAAGTATCAAAGATTCAAAAAATCCTTTTTGAGGCGTCTATTTACTTCAATGCTCCTTCTCAGATGACACAGTTTTCAGAGAAAGCAAAGCCACGAGCCATGAGCCGGGTTCTTGTTGCTATTAAACCCAAATGGTTACAAGTGCAGCAGTTTGATTTTAAAGACAAAGTTTGGCAGCCCTTGCCCTCCGTAGCTGTAATCCCTGGCGCGAATACTTGTGTCACCGCGGAGCTTGTTGGGAACAACGTGTATGTCGGCGAGAATGACACAAAAGAGGATCAGCGCAGCTACGTGTGGTGCTACAATATTGAAAAGAATCTGTGGCATAAACTGCCACCCTTACATGGCCAAATCGGTACATTATGTGCCATGGGAGATTACCTGTACGCAATCAGTTCCGATTTCAAGCAAATTCCGCAACGCTACAGTTTCTTCAAACGTCAATGGCAAAGTATTGCAAGAATAGAGGTTGAAGGAGATGATCAAGGAGAGGACATTTCTCCTTCGGTGATTTTTATGAATGGAGCAGTGGTTTTTCATTCAAAGCTCTATGTCGGATATGAATGCAAGTACTCTTCTCCGGTTGCATCCTTCGATAGTTCACCAGAAACGACCACAGCACGATTTAAAATGTATTGCTTTGACGAAGGACAAAATCAGTGGCACAAAGAAAGCCGACAAGATGTTGATCCGGGATCCCACTTTGGTTCTTGTCTCTTTCTGGTGACTAATAAAATTTGCCTTGCCAGTGGTCCCTTCTATATCGATAACAACACTGGTATCCCTGTGGGTGGCCCTGCCTCTGTGAACGTCTATGATGAGTCAACTGCTGGCCTCACTCCAGAAGAAATAGAAGTGTCTCGCCAGGCTTATGCTGGTCTGCTGTGGAGCAAACAGTTTTATCACTATATTATTAATGACTGGCTTATTGGTGACCCTGAAATGCCGGCTCCACCCAGTGAGAGACTTAAGGGACGCAACTCTGAGGCTGAGTGGAGACAATTATTTAACAGAGACGTTGTATCAATGCCAGACAAGTGGGAGTATCCTTGGTATGCAACTTGGGATTTGGCTTTCCACATGCTTCCCATGAGCAAAATTGACCCTCATTTTGCCAAAGACCAGTTGCTGTTGTTTCTTCGTGAGTGGTACATGGCCCCCAATGGTCAGTTACCAGCCTATGAGTTCGCCCTGGGGGATGTCAACCCGCCTGTCCACGCGCTTGCGTGTCTGATGGTTTATAAAATGACAGGTCGAAAAGGATCTCGGGATGATGAATTTCTATCACGCTGCTTCCAGAAACTCCTCATTAATTTCACTTGGTGGGTGAACAGAAAAGACCCTTCTGGAAAGAACATCTTTGGTGGCGGATTCCTCGGACTTGACAACATCGGAATTTTTGATCGTTCCAAGGATTTACCAGTCCAGGCCAATTTACTGCAGGCTGATGGTACAGCATGGATGGCATTCTACTGTGTTATCATGCTAAACATAGCTTTGGACCTCGCCATTGATGACCAGACATACGAAGACATGGCTTCCAAATTTTTCGAGCATTTCACTCAAATCTCAGACGCCATCAATCAAATGTCCGATGGAGTAGGATTGTGGGATGAACAAGACGGCTTTTATTATGATCACCTTAGCACAGACTCTTGCTCCTTGCCACTGCGCGTGCGTAGTATGGTCGGTCTCGTCCCCCTGATGGCTTGCCTTGTCCTTGATGACGAGTACGTGCAGAAACTTCCAGGATTTAAAAAGCGCCTCGACTGGTTTCTTTCAAACCGAAAAGATTTGGCCTCTCAGGTTTCCTACATAGAAACAGGTGGTGAGAGTCAGTACCATCATCTATTAGCCATTCCAACAAAAGATCAGCTTACCCGTGTACTAAGCTATATGCTGGACGAAGAAGAGTTCCTGTCCCCTTACGGAATTCGTTCCTTGTCGAAGTTTCACGAACAGAATCCTTTCGCGCTGACTTTGAATGGTCAATGTTTTAGCGTAAAGTACGTTCCAGGTGAATCGGATACCTACATGTTTGGTGGCAACAGTAACTGGCGAGGGCCCATCTGGGTTTGCATGAACTACCTTCTCATCGAAGCTCTGGAGCGCTATGATTATTTCTATGGCGACACATACAAGATAGAGTGCCCTACTCGATCAGGAAATCGTATGCGACTGCGCGATGTGGCGCTGGAACTAAGCAGGCGCGTAGTGTCTTTGTTCACTGCCAATGAGGAGGGAAGGAGACCATGTCACGGAACTGACGAGAGATATGCCAAAGATGTTCATTGGAACGATTTGGTGTTGTTTTACGAATATTTTCATCCTGAAACTGGACGGGGATGTGGCGCGAGTCACCAAACAGGATGGACAGCTCTGGTTAGTCGGCTATTGGAGAAAATCGCCAAAAGTCGTTGA

Transcript

chr9Alt.g19301.t1

AAGCGTGAGGAAATCGAGCTCACAATTGTTTATTCAATTCCTACATCGATTTTAACTAAATTTCGTCTGGGGTAAAGGAAGTGGACAGAAGATTTTGCTGTGATGTTAAAGAAACCGCTGAAGCGTCGAGGAACTATAGTAATAGAGCATAATTTGGCTGAGACAAATCGGCTTGCAGAAGATTCCAAAAGAGAAAAAAATTGGAAAAGATGGGGTCCGTATTTATCTGAGAGACAGTGGGGAACTGTGAGGGAAGATTATTCCTTGGATGGATCTTGCTGGGACTCTTTTCCCCATGACCATGCAAGATCACGTGCATACCGGTGGGGTGAAGATGGTTTACTGGGAATCACAGATCGCCAGTGTCGACTTTGCTTTGGATTGGCTCTGTGGAATGAAAAAGATCCCATTCTAAAGGAAAGACTCTTTGGTTTGACTGGAACTGAAGGTAACCATGGTGAAGATGTGAAGGAATGCTACTATTATCTTGACTCAACTCCAACTCACTCTTACATGAAAGCTCTTTACAAATATCCGCAAAATGAATATCCTTATAGCTGGCTAGTTAACGAAAATCGACGAAGATCTCGACAAGAACCTGAATTTGAATTGGAAGACACAGGTGTATTCAATGAAAGCCGTTACTGGGATATCTATGCTGAATATGCAAAGAACACTCCCAATGATATCCTCATACAGATAACCATAGCAAACCGGGGTCCAGAGACAGCACGACTCCATGTTTTGCCCACATTGTGGTTCCGTAACACATGGATCTGGGGCTGTAAACATGAGGGATGCACTCTGAAGGCAAGCATCAAACAGACAGGACCTGATTCAGTGGAATGCAAACATGAAACTTTAGGAAATTATCTTTTTGTTGTGGATGCTGGACCTAATGATGAGCTGCCAGAGTTGCTATTTACAGAGAATGAGACAAACTCTTCGCTTCTCTATGGCATAGAAAATTACACACCTTTTACAAAAGATGCATTTCACCGCTTCGTTATCCGTGGAGAAATTGATGCCGTAAGCGCCAAGAAAAAAGGTTCAAAAGTTGCACCTTACTACATAGTTGAAGTTCCTGCTGGTGAGGAATGTGTTCTCAGATGCCGACTTATGGCACAGGATGAAATTGTAACTAACCCATTTGCTGAAAGAAATTTTGGAGCAATAATGCAGAAACGACTCAAAGAAGCCAATGAATTCTATAAGGTTGCCATACCATCAAACCGACTGCTTATACAAACATCTCCAGAAGCACACCTATATTTTGCTTTCACTGAAAATTCAGATGCAATGGGAACAAGATGTGCCAAGTTTAGGCTTGAGGAACAGTTCATCGATGTGCGTTTGAAAATAGGCAAAGATTGTCTTCCAGCACATCGCATCGTTCTCGCAGCGAATAGTAATTACTTTTACGCCATGTTTACAAAAGCAATGAAGGAATCGAATCAAGAATTGATTGAATTAAAACAAAAAGGCATTTCAGCCGAGGTCTTGAAGATTATCCTGAATTCCATCTACGGCGAGGATCTACGGGTTAACGAGCACAATGCATTGGAAATTCTTGCCACTGCTGACCACCTTCAATTTACAAATGTTGTCCAAAAGTGCTGCGATTTCTTGGTAAGAGAATTTAAGAGGGTTCGATTTGATGTGCAAAGATATTGCCAGCTGATTGATGTAGCAGATACTCGGGCTCTTGGGGATCTAAAGGAGGCTGTCCAATACAGTGTGGCCACTAAGTTCCAGGACATTTGTCACAGCGAAGAATTCCTCTCGCAAATGAATGCAGATCAGTTGATTAGTATCCTCAAGCGAGATGACCTCTATGTCCCTTCAGAGACGTTTGTCTTCAAATCTGTAATGCGTTGGGTACATTACCGGAAGGAGGAGAGAATGCCATTTGCTGCAAAAGTGATTGACGCAGTTCGACTTGGTCTAGTGGATATTACAACACTTATTGAAGAACTCAACACAAAGGACTTCCAACAAGTATCAAAGATTCAAAAAATCCTTTTTGAGGCGTCTATTTACTTCAATGCTCCTTCTCAGATGACACAGTTTTCAGAGAAAGCAAAGCCACGAGCCATGAGCCGGGTTCTTGTTGCTATTAAACCCAAATGGTTACAAGTGCAGCAGTTTGATTTTAAAGACAAAGTTTGGCAGCCCTTGCCCTCCGTAGCTGTAATCCCTGGCGCGAATACTTGTGTCACCGCGGAGCTTGTTGGGAACAACGTGTATGTCGGCGAGAATGACACAAAAGAGGATCAGCGCAGCTACGTGTGGTGCTACAATATTGAAAAGAATCTGTGGCATAAACTGCCACCCTTACATGGCCAAATCGGTACATTATGTGCCATGGGAGATTACCTGTACGCAATCAGTTCCGATTTCAAGCAAATTCCGCAACGCTACAGTTTCTTCAAACGTCAATGGCAAAGTATTGCAAGAATAGAGGTTGAAGGAGATGATCAAGGAGAGGACATTTCTCCTTCGGTGATTTTTATGAATGGAGCAGTGGTTTTTCATTCAAAGCTCTATGTCGGATATGAATGCAAGTACTCTTCTCCGGTTGCATCCTTCGATAGTTCACCAGAAACGACCACAGCACGATTTAAAATGTATTGCTTTGACGAAGGACAAAATCAGTGGCACAAAGAAAGCCGACAAGATGTTGATCCGGGATCCCACTTTGGTTCTTGTCTCTTTCTGGTGACTAATAAAATTTGCCTTGCCAGTGGTCCCTTCTATATCGATAACAACACTGGTATCCCTGTGGGTGGCCCTGCCTCTGTGAACGTCTATGATGAGTCAACTGCTGGCCTCACTCCAGAAGAAATAGAAGTGTCTCGCCAGGCTTATGCTGGTCTGCTGTGGAGCAAACAGTTTTATCACTATATTATTAATGACTGGCTTATTGGTGACCCTGAAATGCCGGCTCCACCCAGTGAGAGACTTAAGGGACGCAACTCTGAGGCTGAGTGGAGACAATTATTTAACAGAGACGTTGTATCAATGCCAGACAAGTGGGAGTATCCTTGGTATGCAACTTGGGATTTGGCTTTCCACATGCTTCCCATGAGCAAAATTGACCCTCATTTTGCCAAAGACCAGTTGCTGTTGTTTCTTCGTGAGTGGTACATGGCCCCCAATGGTCAGTTACCAGCCTATGAGTTCGCCCTGGGGGATGTCAACCCGCCTGTCCACGCGCTTGCGTGTCTGATGGTTTATAAAATGACAGGTCGAAAAGGATCTCGGGATGATGAATTTCTATCACGCTGCTTCCAGAAACTCCTCATTAATTTCACTTGGTGGGTGAACAGAAAAGACCCTTCTGGAAAGAACATCTTTGGTGGCGGATTCCTCGGACTTGACAACATCGGAATTTTTGATCGTTCCAAGGATTTACCAGTCCAGGCCAATTTACTGCAGGCTGATGGTACAGCATGGATGGCATTCTACTGTGTTATCATGCTAAACATAGCTTTGGACCTCGCCATTGATGACCAGACATACGAAGACATGGCTTCCAAATTTTTCGAGCATTTCACTCAAATCTCAGACGCCATCAATCAAATGTCCGATGGAGTAGGATTGTGGGATGAACAAGACGGCTTTTATTATGATCACCTTAGCACAGACTCTTGCTCCTTGCCACTGCGCGTGCGTAGTATGGTCGGTCTCGTCCCCCTGATGGCTTGCCTTGTCCTTGATGACGAGTACGTGCAGAAACTTCCAGGATTTAAAAAGCGCCTCGACTGGTTTCTTTCAAACCGAAAAGATTTGGCCTCTCAGGTTTCCTACATAGAAACAGGTGGTGAGAGTCAGTACCATCATCTATTAGCCATTCCAACAAAAGATCAGCTTACCCGTGTACTAAGCTATATGCTGGACGAAGAAGAGTTCCTGTCCCCTTACGGAATTCGTTCCTTGTCGAAGTTTCACGAACAGAATCCTTTCGCGCTGACTTTGAATGGTCAATGTTTTAGCGTAAAGTACGTTCCAGGTGAATCGGATACCTACATGTTTGGTGGCAACAGTAACTGGCGAGGGCCCATCTGGGTTTGCATGAACTACCTTCTCATCGAAGCTCTGGAGCGCTATGATTATTTCTATGGCGACACATACAAGATAGAGTGCCCTACTCGATCAGGAAATCGTATGCGACTGCGCGATGTGGCGCTGGAACTAAGCAGGCGCGTAGTGTCTTTGTTCACTGCCAATGAGGAGGGAAGGAGACCATGTCACGGAACTGACGAGAGATATGCCAAAGATGTTCATTGGAACGATTTGGTGTTGTTTTACGAATATTTTCATCCTGAAACTGGACGGGGATGTGGCGCGAGTCACCAAACAGGATGGACAGCTCTGGTTAGTCGGCTATTGGAGAAAATCGCCAAAAGTCGTTGAAACACGGCAATAAAGGCCGCATTTGCAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q04336	Uncharacterized protein YMR196W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YMR196W PE=1 SV=1
Q8WZ60	Kelch-like protein 6 OS=Homo sapiens OX=9606 GN=KLHL6 PE=1 SV=3
P28575	Actin-binding protein IPP OS=Mus musculus OX=10090 GN=Ipp PE=2 SV=3

Gene family

Family type	Membership / link
Transcription factor family	ZBTB · all TF in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03200 all species →	Glyco_hydro_63	Glycosyl hydrolase family 63 C-terminal domain	Repeat	Interproscan
PF07707 all species →	BACK	BTB And C-terminal Kelch	Domain	Interproscan
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR031335 all species →	Domain	Glycosyl hydrolase family 63, C-terminal	Interproscan
IPR011705 all species →	Domain	BTB/Kelch-associated	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR004888 all species →	Family	Glycoside hydrolase family 63	Interproscan
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10412 all species →	MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004573 all species →	Molecular Function	Glc3Man9GlcNAc2 oligosaccharide glucosidase activity	Interproscan
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0009311 all species →	Biological Process	oligosaccharide metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01196	AGL; glycogen debranching enzyme	EC:2.4.1.25 EC:3.2.1.33	Starch and sucrose metabolism	ko00500	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.