Gene detail

Detailed information of g19386.t1.1 in Blastomussa wellsi

Genomic Location: :...
NR annotation: XP_020630368.1, hypoxia-inducible factor 1-alpha-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

g19386.t1

ATGACTGGCCCAGATGAGGTTTTCCAGCGAATTTCGAATACGTTATCACAGACCTACAAAGGAGAAAACTGTGGTCATTTCTTTGTAGAAGCGAGATTAAGCAACGagtatcaaaagaaaagaaggTCGCGAGATGCGGCACGATCTAGAAGAGGGCAACAGAACGACGAGTTTGTGGAATTAGCCAATCAGCTTCCACTGCCAGTGGGCTTGTCATCACAGCTGGACAGGCTGTGCATTATGCGCCTTGTCAACAGCTACATTAAGATGAAAAACCTCCTTCGTTCTCTTGTCGCTCAAGATCTGAAGAAAATTGTAACTCTAAATGTGTCGGAAACCACAGTTTATGACAAGTCTTCATTGGAGGCACTGGATGGCTTTGTCTTTGTGGTGACGCCAGATGGTCAGTGCATCTATGTGTCAGATAACATCAACCACTACATGGGATTATCACAGATTGAAGTAACTGGTAACAGTTTTTACAAGTACATTCACCCCTGTGATCATGAGGAGTTATCCAATCAGCTCGGAGGGCAGATTCCACTGGAAGACATGGAAATATTTGATGGCCTCTTCTGCTCAGATTCAGTCTTCATGATGAGTAACCACCTCAAGGGAGGATCAAAGAATGTTGTGCATGAGAATCCACACAAGTCGTTCTTCTTGCGAATGAAAAGCACTTTGACGAGCAGAGGGAAAAATGTTAACCTCCGAGCATCAACCTACAGGGTCGTCCATTGTACTGGCTGCATGAAAATGCAGACCAGAGTTTTGGAGTCAGGAGAAGACGAGCAAGTCCCATTGTTTCTGGTTGGCATCGGAGTGCCACTGATGTTTGGCTCAACATTTGAAGTTCCTCTGGACAGAGCAACATTCACCAGTCGTCACAGTCTTGACATGAATTTCCTATCATGTGATGAAAGTGTTGCTGACCTGCTGGGTTTCACGCCAGCAGAGATTGTCGGCAAGTCTTGGTACCACTTTCAACATGCTTGTGACCTGGACACTGCATTAGCCTGCCACAAGACATTGCTAACCAAGGGGCAGTCAGTAAGCAAGTACTACCGTTTCTTAGTGCGCAATGGAGGCTGGGTGTGGCTACAGACCAAGGCAAACATAGTTTACGACAGCAAGACATGTCAGCCACAGTTTGTCCTGTGCACAAATTACATCATCATGAGAGCAGACCAGCAGGGATATATTCTATCCTCAGAGCAATTAAACCCAGTCCCTGCACCTCTAGGACTGGACCTAGTGGTGAAGAAAGAAAACAGCAAAGGACGAGGAACAAGAAGGAAGCATTCCATTGTGTTTGAAGAACGCACTAAGCTGCTAAAGGCTGCTGCACATGAACAGCGTCCAGGAGATATTGTGCCTAAGAAGGAGGCCAGTCTTGACACATGCTGTAAGATGGCTCCGTCTAAACAGATTGCTAAGAAATCCTGTCAGTGCCTGGAGGATGTCGACTGCGAGCACATGAATTTCCAGGATTGTCTGCCAGTAGCCTGGGACACTAATGAAGAGGTTATCGCACAACAGGAAAAGTATGAAAACTTGCTGCACAGTCACTATGGTTTCATGGATACCACACAGCCCTCTTCACCAGAAAACAGCACCACTGAAAACAGAGTTCCATATATTCCCTCACCAAGTGATGACCAAAAAATTAGTGCAGACAAAGAAAAGGAGGCAAATGACGAAGAAGAGAACTTTGATGAGCGTGCACCATTCATTCCTTTGTCCATAGTAGATTCTGGGTTGGATTGCGATGACGAATTACTTGTTGAGATTCCATTCATTGATTCGCCAATGACACCATCATCATGGCTGCTGAATGCCGAGGAGAGCATTCCATCTCCAGGAAGTGTATCTATGACGCCTCCACCTTCAAACATACCTGCCAGTTCTTACGCACGACGACCAAGTTTGTCCAACTCTTCATCACCAGTTATGCTGCGAAAAGCTGTGCCAACAGCAGTGAAACGAAATGGTTACGTGACAAATGAGGTAATTTCCAAAGGGAAGGGGCTCTTTCCGTACATCACCACATGGGACGCTGAGGTCAACGCACCAGTTCAAAATACACTTCTGCAGGGAGAGGAGTTACTAAGAGCTCTTGAATGTGCAGACTTCTTGTGA

Transcript

g19386.t1

Protein

Uniprot

Uniprot term	Description
Q309Z6	Hypoxia-inducible factor 1-alpha OS=Eospalax fontanierii baileyi OX=146132 GN=HIF1A PE=2 SV=1
Q0PGG7	Hypoxia-inducible factor 1-alpha OS=Bos mutus grunniens OX=30521 GN=HIF1A PE=2 SV=1
Q9XTA5	Hypoxia-inducible factor 1-alpha OS=Bos taurus OX=9913 GN=HIF1A PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08778	HIF-1a_CTAD	HIF-1 alpha C terminal transactivation domain	Domain	Interproscan
PF00989	PAS	PAS fold	Domain	Interproscan
PF14598	PAS_11	PAS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014	Domain	PAS domain	Interproscan
IPR014887	Domain	HIF-1 alpha, C-terminal transactivation domain	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR001067	Family	Nuclear translocator	Interproscan
IPR013767	Domain	PAS fold	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR001610	Repeat	PAC motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23043	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08268	HIF1A; hypoxia-inducible factor 1 alpha	-	Transcription factors	ko03000	deepkoala