Genomic Location: chr9Alt:6555564...6566023
NR annotation: XP_029184508.2, lysine-specific demethylase 2B-like isoform X3 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families
| CDS |
| g19452.t1 |
| Transcript |
| chr9Alt.g19452.t1 |
| Protein |
| chr9Alt.g19452.t1 |
| UniProt accession | Description |
|---|---|
| Q640I9 | Lysine-specific demethylase 2B OS=Xenopus laevis OX=8355 GN=kdm2b PE=2 SV=1 |
| Q8NHM5 | Lysine-specific demethylase 2B OS=Homo sapiens OX=9606 GN=KDM2B PE=1 SV=1 |
| Q6P1G2 | Lysine-specific demethylase 2B OS=Mus musculus OX=10090 GN=Kdm2b PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Ubiquitin family | E3|E3 activity RING|PHD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02373 all species → | JmjC | JmjC domain, hydroxylase | Domain | Interproscan |
| PF02008 all species → | zf-CXXC | CXXC zinc finger domain | Domain | Interproscan |
| PF16866 all species → | PHD_4 | PHD-finger | Domain | Interproscan |
| PF17811 all species → | JHD | Jumonji helical domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003347 all species → | Domain | JmjC domain | Interproscan |
| IPR019787 all species → | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR002857 all species → | Domain | Zinc finger, CXXC-type | Interproscan |
| IPR050690 all species → | Family | JHDM1 Histone Demethylase | Interproscan |
| IPR011011 all species → | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR041070 all species → | Domain | Jumonji, helical domain | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23123 all species → | PHD/F-BOX CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0003712 all species → | Molecular Function | transcription coregulator activity | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0006482 all species → | Biological Process | protein demethylation | Interproscan |
| GO:0032452 all species → | Molecular Function | histone demethylase activity | Interproscan |
g19452.t1.
