Gene detail

Detailed information of g19516.t1 in Montipora capitata

Genomic Location: Sc0001033:1155...26411
NR annotation: XP_015771091.1, PREDICTED: uncharacterized protein LOC107349459 [Acropora digitifera]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g19516.t1

atgaagaatcttcgaggagctgagctcaagctggctgaattgcaatcgaagtacagtggaatggaaaagcagaacttcgagcttagtgaaaaggttaaaaagttgcagaaaacagagagagaatttcagagactggagaataacattgaacgcttacaggcacaggttcaagaaatggacatagtagaacaagatcgagaccaactggtggaaaaaataaagatcattgaaaatcagcgggatgatttgttgagaaaaggaaaggtggtcgaatccgagagaaataatttccttcgaaacaacaagctaatggagatgcagaaagacgacctagacagcagatgcaacatgttacaaaagacaaatgtgaccttgaattctaggctggccgaacttgaacgcgaaaccaaggaagctcaaacgaagatgcacgatagtcaacatgaacgaaacttcctccaagtgcagctcgacaaagtggaagaagaaaagaacgagattcagaaaagacttgcgatcaccacacaggaacgaaattcattagaaaaccaggtcgccgaactgcaggacctcaacagggaccacgtcaaattggaggatgggtaccacacactgagaattaagctagcggaaagaacgcgagaaaaggatgaagctgagctgcagataccaactctgaaggctaagatttcgttgctgaaaaaggcttgcaaagataaagatgaaagcataaacaatctaagtgaagaaatccgcgagctgcgacattccatcgctacatcggccctcgacgatttgtcgaagatccgaacctatggctactctccggagaacttcgtcaaactctcggctcaaagggaacaagagcgacagctagccaaacgagaacccaaggacttggaagaccaaagaccgaaaagcaggcttgaggagcattctcaacgcccttcgtccaaggagcttttttcaccttcgcctccaggaaccaaaagggctaagcgcttcgtggtgttgttcgattacgaccctcagaaatcgccctcatctgaacaccctgaactggagctcaagttgaaagaaggggacttcatcacggtgtttggtgacatggatgcaaatggatattttgaagcagacctgaatggcgtgcggggtctggttccaagtttgtacgtggacgaagtagacgatgacgatgattccgaccgcgagttggagcagcttttaactacgtcacacagaggcaaagcggatgagactcctttcatcgaagacagcgaacttccgcttaaaagagaactcatctccaaaggccagattacctcgggtaccacttctgttgattctgagtcgcgtcagtgcatggtggctctacatgattataatcctttcacgtctggggtccctggacggtcacctcacgagcagctgtcattcaaaaaaggtgacgtcatgaccgcacatggagacatggatctgaatcgattttacctcgttgatcttgctgcttcgtcgacagctatattcactcctactgctgtcactaccagtgtctatccatcacaagtagacgctgacgtcacaccccttcgtcacttgcgccttcccgctcattctctgcctaatgtaggtttgacgagattcaagccatcgccggacgtggtaaagttaggtccgtcgccagttgatgttgtacctgcgtcctccctccagacctctcaaagaccagttccgtcggtggtggcagaaaaaccagtggcaacagcgtttaaaagttccccttcaaaacaagttgttcctgtcggcccaagcaggcctcgagcttctgggaaagtacgcccgaatccacccagcttctttcgagttcttcggccagtaaaccatgatgccatgttgttggcctggacactaccggaactagatgagtttggaaggagcaatggtcttcctgtcaggggatacaagatatatgctaatgatgaagcgaaactggaagtgcggagcccatacatggccaaggctttagtagagaatcttgaccttaacgaacccatcaaattcagcataaaaacggtggctgaaaatggcacctcttctggatcagtttctgcaacgtttaatgatacaatcaaacgaagtctactgtttgttgctctctttgactacgacccattcaaaagctctccgaaccctaacccagcgagcgagctggtcttcaaggagggagacatcctgaaagtcttcgacacctcaaggaaagacggcttctatttgggaaagctaaaacagaagagcggacttgttccatccaatttcgtggaggaagtagccgtcgcctcaccacgcagattggcggcagccaagaagcgtcaggcagctcttcccagtccagctcgtccatactcaagagagagtgattcgagtgtaagtgttcattcaccgtcacttgctacaaaagatcgtgagccgctcagtcgaaaggttatggttgcgctttatgattacaatccagaggtccagtcaccacaggataatcctgactctgaactggcctttagaaaaggacatttgcttactgttattggagaaatggtgagagctttaaatgattttgtcactgttgcaacgagcaaccaatcgcatgagtatcacgagtgctgtctttgtgatagcatcctccaatggtgctgtcgaaaatag

Transcript

g19516.t1

ATGAAGAATCTTCGAGGAGCTGAGCTCAAGCTGGCTGAATTGCAATCGAAGTACAGTGGAATGGAAAAGCAGAACTTCGAGCTTAGTGAAAAGGTTAAAAAGTTGCAGAAAACAGAGAGAGAATTTCAGAGACTGGAGAATAACATTGAACGCTTACAGGCACAGGTTCAAGAAATGGACATAGTAGAACAAGATCGAGACCAACTGGTGGAAAAAATAAAGATCATTGAAAATCAGCGGGATGATTTGTTGAGAAAAGGAAAGGTGGTCGAATCCGAGAGAAATAATTTCCTTCGAAACAACAAGCTAATGGAGATGCAGAAAGACGACCTAGACAGCAGATGCAACATGTTACAAAAGACAAATGTGACCTTGAATTCTAGGCTGGCCGAACTTGAACGCGAAACCAAGGAAGCTCAAACGAAGATGCACGATAGTCAACATGAACGAAACTTCCTCCAAGTGCAGCTCGACAAAGTGGAAGAAGAAAAGAACGAGATTCAGAAAAGACTTGCGATCACCACACAGGAACGAAATTCATTAGAAAACCAGGTCGCCGAACTGCAGGACCTCAACAGggaCCACGTCAAATTGGAGGATGGGTACCACACACTGAGAATTAAGCTAGCGGAAAGAACGCGAGAAAAGGATGAAGCTGAGCTGCAGATACCAACTCTGAAGGCTAAGATTTCGTTGCTGAAAAAGGCTTGCAAAGATAAAGATGAAAGCATAAACAATCTAAGTGAAGAAATCCGCGAGCTGCGACATTCCATCGCTACATCGGCCCTCGACGATTTGTCGAAGATCCGAACCTATGGCTACTCTCCGGAGAACTTCGTCAAACTCTCGGCTCAAAGGGAACAAGAGCGACAGCTAGCCAAACGAGAACCCAAGgaCTTGGAAGACCAAAGACCGAAAAGCAGGCTTGAGGAGCATTCTCAACGCCCTTCGTCCAAGGAGCTTTTTTCACCTTCGCCTCCAGGAACCAAAAGGGCTAAGCGCTTCGTGGTGTTGTTCGATTACGACCCTCAGAAATCGCCCTCATCTGAACACCCTGAACTGGAGCTCAAGTTGAAAGAAGGGGACTTCATCACGGTGTTTGGTGACATGGATGCAAATGGATATTTTGAAGCAGACCTGAATGGCGTGCGGGGTCTGGTTCCAAGTTTGTACGTGGACGAAGTAGACGATGACGATGATTCCGACCGCGAGTTGGAGCAGCTTTTAACTACGTCACACAGAGGCAAAGCGGATGAGACTCCTTTCATCGAAGACAGCGAACTTCCGCTTAAAAGAGAACTCATCTCCAAAGGCCAGATTACCTCGGGTACCACTTCTGTTGATTCTGAGTCGCGTCAGTGCATGGTGGCTCTACATGATTATAATCCTTTCACGTCTGGGGTCCCTGGACGGTCACCTCACGAGCAGCTGTCATTCAAAAAAGGTGACGTCATGACCGCACATGGAGACATGGATCTGAATCGATTTTACCTCGTTGATCTTGCTgCTTCGTCGACAGCTATATTCACTCCTACTGCTGTCACTACCAGTGTCTATCCATCACAAGTAGACGCTGACGTCACACCCCTTCGTCACTTGCGCCTTCCCGCTCATTCTCTGCCTAATGTAGGTTTGACGAGATTCAAGCCATCGCCGGACGTGGTAAAGTTAGGTCCGTCGCCAGTTGATGTTGTACCTGCGTCCTCCCTCCAGACCTCTCAAAGACCAGTTCCGTCGGTGGTGGCAGAAAAACCAGTGGCAACAGCGTTTAAAAGTTCCCCTTCAAAACAAGTTGTTCCTGTCGGCCCAAGCAGGCCTCGAGCTTCTGGGAAAGTACGCCCGAATCCACCCAGCTTCTTTCGAGTTCTTCGGCCAGTAAACCATGATGCCATGTTGTTGGCCTGGACACTACCGGAACTAGATGAGTTTGGAAGGAGCAATGGTCTTCCTGTCAGGGGATACAAGATATATGCTAATGATGAAGCGAAACTGGAAGTGCGGAGCCCATACATGGCCAAgGCTTTAGTAGAGAATCTTGACCTTAACGAACCCATCAAATTCAGCATAAAAACGGTGGCTGAAAATGGCACCTCTTCTGGATCAGTTTCTGCAACGTTTAATGATACAATCAAACGAAGTCTACTGTTTGTTGCTCTCTTTGACTACGACCCATTCAAAAGCTCTCCGAACCCTAACCCAGCGAGCGAGCTGGTCTTCAAGGAGGGAGACATCCTGAAAGTCTTCGACACCTCAAGGAAAGACGGCTTCTATTTGGGAAAGCTAAAACAGAAGAGCGGACTTGTTCCATCCAATTTCGTGGAGGAAGTAGCCGTCGCCTCACCACGCAGATTGGCGGCAGCCAAGAAGCGTCAGGCAGCTCTTCCCAGTCCAGCTCGTCCATACTCAAGAGAGAGTGATTCGAGTGTAAGTGTTCATTCACCGTCACTTGCTACAAAAGATCGTGAGCCGCTCAGTCGAAAGGTTATGGTTGCGCTTTATGATTACAATCCAGAGGTCCAGTCACCACAGGATAATCCTGACTCTGAACTGGCCTTTAGAAAAGGACATTTGCTTACTGTTATTGGAGAAATGGTGAGAGCTTTAAATGATTTTGTCACTGTTGCAACGAGCAACCAATCGCATGAGTATCACGAGTGCTGTCTTTGTGATAGCATCCTCCAATGGTGCTGTCGAAAATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95153	Peripheral-type benzodiazepine receptor-associated protein 1 OS=Homo sapiens OX=9606 GN=TSPOAP1 PE=1 SV=2
Q8QFX1	RIMS-binding protein 2 OS=Gallus gallus OX=9031 GN=RIMBP2 PE=1 SV=1
O15034	RIMS-binding protein 2 OS=Homo sapiens OX=9606 GN=RIMBP2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001603 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040325 all species →	Family	RIMS-binding protein 1/2/3	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14234 all species →	RIM BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007274 all species →	Biological Process	neuromuscular synaptic transmission	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g19516.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g19516.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

202.2Max TPM

77.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	75.47	168.90
whole organisms · low pH treatment	15	15	78.66	166.34
whole organisms · extra low pH treatment pH treatment	12	12	78.25	202.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	168.90
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	150.64
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	149.53
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	135.55
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	134.30
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	117.27
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	80.87
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	73.36
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	69.71
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	65.67
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	65.09
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	60.59
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	57.98
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	57.29
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	53.09
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	50.24
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	26.49
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	22.02
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	18.61
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	16.60
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	11.08
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	166.34
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	145.46
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	122.48
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	121.41
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	112.06
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	99.83
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	66.86
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	65.83
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	62.61
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	60.54
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	58.76
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	54.56
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	16.44
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	13.79
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	12.90
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	202.17
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	131.71
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	114.08
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	109.69
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	70.89
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	68.55
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	67.56
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	64.87
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	62.72
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	17.37
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	15.10
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	14.26

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.