Gene detail

Detailed information of g19535.t2 in Acropora digitifera

Genomic Location: chr9Alt:7693607...7716172
NR annotation: XP_029213158.2, kinase suppressor of Ras 2-like isoform X2 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g19535.t2

ATGGAAGCGCTGGACTTGTTTCACAGACTTGTATCTGTCGCTCGGCCGAGACAAAGACGTTATCGGCTGACATCACAGCCTGCAATGGATGTAAACCGTAGCATGGACAGCATTTTAGACAATATGGAAGGTCATTCCCAGCGAAGGTCTTCATACTCCAATTTTGAGCTAAGGGCAATTAAGAGACTTCAAACACGAAAGATGTCGTCGAATGGACTGGCAGTTTCGAAGGTCCTCGAGCAGATCCAAATGGTTCAAGGCATGATAGATATGAACGCTTCTAGTTTGAACAGCCTGCGAACTCAGTTCTCCACCAACAGTGATCTAATCCAACAGGAAATTCGCACCCTGGAGGGCAAATTGGTTAAGTTATTTTCTCGTCAGTTGGTGACGAAGCAGAAATGCAGTGAAGATTGGAATCATTGTGAGAAATTGCGTTATTATCCGAGACTAGAACAATGGCTTCAAGTTGTGGGAATCAATGAAGAGGCGATCAAAAGCTTAGAAGAAAAGTGCAACACCATAGAGGGTTTGTTATCCCTTTCTGATGAAAAAGTAAGAGCTGTTCTAGAAAACTATGCAGATGGAAAGGAAGAAAGTCGCAGATTGATAGCTGCATTGAAGCATCTTCACGCTTACACAGAGCGCCAGAAGCAAGGTCACAAAGACAGCACTTCAGACATATACTGGGATTCGTGGGACACTGGAAGGACAAGAGAAAAAACAGCATCAACGTCTTTGTCAGAGCGATCATCGCGGTCATCAGTTACTCTGGACAATGAGGTTCTCTCGTCGTCGCCAAGCTTGGACGCTAATAGTGAGGGATCCAGGCTATCAACTCTGTCCTCAAGCGACACAGACACTGCACCCAGTTTCAAGCAGCACAGCCCATTGCCAGCTCATTTCATAGTGCGCAACGGCAGCCCTTCTTCGCCACTAAAGAGGAGTGTTTCTGATGAAGTTAATCTGGCTCACAGAATTCACATCACCAATGAACACGCGAGTGCGACGGTCGGCAAGAAGCGTGGAAGGGGTAAACTTGAGCCGATTGTACCTGGCATGACAATACAGATTCCTAAGAGTGTCAGTGGGGACATCTGTCAATCGGACTCTGAATATGATCATAATTCAAGTTGTCACACCCTTGATTCTTCATCTCCGTCAAGGATAACACATTATGGTATGCAGCATGCAATCAAACACAGGTTTTCACAGAAGACCTTTTTGGCGAGCTTGGCCTGTGACCATTGTCACAAGATCCTTTTGGTCGGCGTCAAGTGCAAGCACTGCAGAATGAAGTTCCACAAGAAATGTGCCAAACGCACCCCTTCTCTTTGCCAATTGCCGAAGCCGTATGGGGATTTCTTTGTGAGTCAGGTGCGGCGAGCTTGGGAATATCGCTCATTGCCTAGTACACGCTCCGGATTCAAGCGAACCAATTCGGAACCTTCCAGCATAGCACTTCAAGTGGAAGGGTTAAAACAGAAGGGCAGAGCCAACCGCAGCCATGGCGACTTGAATTCAGTCGACCAGAAGTGCAACAGTGAGATTCCCGTTCAGTTCAGCCACAAGGGCAGTGCCACTAATGGCGATTCTGGGTCGACGTCATCGTCTACGTCATCACCACCGGCATCGCCGCTTCCCAGTGCTGCCTCGGTGTCCACGAGCACTTGCTTGTCGGCTCAAGAGGAGCTAGACCAGTTCCCAGGCTCACATTTTCCCTTCTCAGATGTTTCAAGAAGAATGTCACCCGCCCAAAGCAACGAAATGATTGACTCTACTAGTACACTGACGAGAACAGAAAGTGTCAAGTCGCAGAAGAGTAACAACACAACGGCTAGCAATGACTCGACTCTTTCTGGAGACGATGCCCCTGGTGTTGATGTTTTAGGCAAACAGATCTCGGATTTTGATTCTCACACCAGAACGTGGGGACGTCGCGAGGTTGGAAAAGCGCATATGCTCTGGGATTTACATCAAAGAGGCAGTTTAATGTCTGAGTGGGTGATACCGTTTGAAGAGCTGGATATCACGTGGAATCCGCTTGGTGCTGGAAGATTTGGCAAAGTTTACAGGGGTCACTGGCACGGCGAAGTCGCTGTGAAGATCATTGAGATCGAAAACCCAACGGAAGAACAGTTGAACGCGTTCAAATTTCAAGTTGGTACATTCCGCAAGACCCGGCACGAGAACGTGGTACTTTTCATGGGAGCGTGTATGGATCCACCTAAACTCGCCATTATCACCAGTATGTGCCGGGGATTTTCTCTTTATACTCACGTGCATGTACGGAAGGACGACTTTCAGCTGCCAAAAATTTCCCAAATTTGTACCCAAATTTCCCAGGGAATGGGTTATCTTCACGCTCGAGGAATCGTTCATACTGATCTGCGGTCGAAGAATGTATTCCTTGAGTCCGCCAATCGCGTGGTCATCACAGACTTTGGTTTGTTTAGCGTGGCTGGCCTAACCACCAAATCAGCGAGACCTGGCTGGCTCTTAATTCCCGAGGGATGGTTGCCATATTTGGCGCCGGAAGTAATTCGATCTCTCACAACCCAACAGGACGCACCGGATTCGTCCCAGTTCACCATGGCAACGGATATGTATGCTTTTGGGACTGTGTGGTATGAGATGTGCATTGGTGCGTGGCCTTTCAGGAAGCAAATTCCCGAGGCGATAATATGGCAGGTTGGAAAAGGAGTCAAGCCTCCACTTACCACTGTGGATGTACCTCGAGAAGTCAAGGACACCTTGACTGTTTGCTGGGCGTATGATCCCGAAAAACGGCCAACATTTAGCAATCTGCTGAGAACGCTTGAGAGACTGCCCAAACAACGACAGAGACTGCGGAGAAGCCCTTCACAGCCGTGTACTGTCGGAAGGGGGACAGAGGCTGTCATTTGA

Transcript

chr9Alt.g19535.t2

ATTACTGCAGCCATTTTCAAGCGATTAGCCCAAGTTCAACAAGCTTTGTACAGACGTGGGAAGGTTCCTCGCCTTGGCAGTGACAACATAATCCTTTCAAGATGAGCGAAGAACAAGTCAACCTTAAACAACAACGAGAGAGAAACGTTCAAAGTTTCTTTTGAGCTGATGGCTTAGATTGGTTGTTAACATCGAGCATGGAAGCGCTGGACTTGTTTCACAGACTTGTATCTGTCGCTCGGCCGAGACAAAGACGTTATCGGCTGACATCACAGCCTGCAATGGATGTAAACCGTAGCATGGACAGCATTTTAGACAATATGGAAGGTCATTCCCAGCGAAGGTCTTCATACTCCAATTTTGAGCTAAGGGCAATTAAGAGACTTCAAACACGAAAGATGTCGTCGAATGGACTGGCAGTTTCGAAGGTCCTCGAGCAGATCCAAATGGTTCAAGGCATGATAGATATGAACGCTTCTAGTTTGAACAGCCTGCGAACTCAGTTCTCCACCAACAGTGATCTAATCCAACAGGAAATTCGCACCCTGGAGGGCAAATTGGTTAAGTTATTTTCTCGTCAGTTGGTGACGAAGCAGAAATGCAGTGAAGATTGGAATCATTGTGAGAAATTGCGTTATTATCCGAGACTAGAACAATGGCTTCAAGTTGTGGGAATCAATGAAGAGGCGATCAAAAGCTTAGAAGAAAAGTGCAACACCATAGAGGGTTTGTTATCCCTTTCTGATGAAAAAGTAAGAGCTGTTCTAGAAAACTATGCAGATGGAAAGGAAGAAAGTCGCAGATTGATAGCTGCATTGAAGCATCTTCACGCTTACACAGAGCGCCAGAAGCAAGGTCACAAAGACAGCACTTCAGACATATACTGGGATTCGTGGGACACTGGAAGGACAAGAGAAAAAACAGCATCAACGTCTTTGTCAGAGCGATCATCGCGGTCATCAGTTACTCTGGACAATGAGGTTCTCTCGTCGTCGCCAAGCTTGGACGCTAATAGTGAGGGATCCAGGCTATCAACTCTGTCCTCAAGCGACACAGACACTGCACCCAGTTTCAAGCAGCACAGCCCATTGCCAGCTCATTTCATAGTGCGCAACGGCAGCCCTTCTTCGCCACTAAAGAGGAGTGTTTCTGATGAAGTTAATCTGGCTCACAGAATTCACATCACCAATGAACACGCGAGTGCGACGGTCGGCAAGAAGCGTGGAAGGGGTAAACTTGAGCCGATTGTACCTGGCATGACAATACAGATTCCTAAGAGTGTCAGTGGGGACATCTGTCAATCGGACTCTGAATATGATCATAATTCAAGTTGTCACACCCTTGATTCTTCATCTCCGTCAAGGATAACACATTATGGTATGCAGCATGCAATCAAACACAGGTTTTCACAGAAGACCTTTTTGGCGAGCTTGGCCTGTGACCATTGTCACAAGATCCTTTTGGTCGGCGTCAAGTGCAAGCACTGCAGAATGAAGTTCCACAAGAAATGTGCCAAACGCACCCCTTCTCTTTGCCAATTGCCGAAGCCGTATGGGGATTTCTTTGTGAGTCAGGTGCGGCGAGCTTGGGAATATCGCTCATTGCCTAGTACACGCTCCGGATTCAAGCGAACCAATTCGGAACCTTCCAGCATAGCACTTCAAGTGGAAGGGTTAAAACAGAAGGGCAGAGCCAACCGCAGCCATGGCGACTTGAATTCAGTCGACCAGAAGTGCAACAGTGAGATTCCCGTTCAGTTCAGCCACAAGGGCAGTGCCACTAATGGCGATTCTGGGTCGACGTCATCGTCTACGTCATCACCACCGGCATCGCCGCTTCCCAGTGCTGCCTCGGTGTCCACGAGCACTTGCTTGTCGGCTCAAGAGGAGCTAGACCAGTTCCCAGGCTCACATTTTCCCTTCTCAGATGTTTCAAGAAGAATGTCACCCGCCCAAAGCAACGAAATGATTGACTCTACTAGTACACTGACGAGAACAGAAAGTGTCAAGTCGCAGAAGAGTAACAACACAACGGCTAGCAATGACTCGACTCTTTCTGGAGACGATGCCCCTGGTGTTGATGTTTTAGGCAAACAGATCTCGGATTTTGATTCTCACACCAGAACGTGGGGACGTCGCGAGGTTGGAAAAGCGCATATGCTCTGGGATTTACATCAAAGAGGCAGTTTAATGTCTGAGTGGGTGATACCGTTTGAAGAGCTGGATATCACGTGGAATCCGCTTGGTGCTGGAAGATTTGGCAAAGTTTACAGGGGTCACTGGCACGGCGAAGTCGCTGTGAAGATCATTGAGATCGAAAACCCAACGGAAGAACAGTTGAACGCGTTCAAATTTCAAGTTGGTACATTCCGCAAGACCCGGCACGAGAACGTGGTACTTTTCATGGGAGCGTGTATGGATCCACCTAAACTCGCCATTATCACCAGTATGTGCCGGGGATTTTCTCTTTATACTCACGTGCATGTACGGAAGGACGACTTTCAGCTGCCAAAAATTTCCCAAATTTGTACCCAAATTTCCCAGGGAATGGGTTATCTTCACGCTCGAGGAATCGTTCATACTGATCTGCGGTCGAAGAATGTATTCCTTGAGTCCGCCAATCGCGTGGTCATCACAGACTTTGGTTTGTTTAGCGTGGCTGGCCTAACCACCAAATCAGCGAGACCTGGCTGGCTCTTAATTCCCGAGGGATGGTTGCCATATTTGGCGCCGGAAGTAATTCGATCTCTCACAACCCAACAGGACGCACCGGATTCGTCCCAGTTCACCATGGCAACGGATATGTATGCTTTTGGGACTGTGTGGTATGAGATGTGCATTGGTGCGTGGCCTTTCAGGAAGCAAATTCCCGAGGCGATAATATGGCAGGTTGGAAAAGGAGTCAAGCCTCCACTTACCACTGTGGATGTACCTCGAGAAGTCAAGGACACCTTGACTGTTTGCTGGGCGTATGATCCCGAAAAACGGCCAACATTTAGCAATCTGCTGAGAACGCTTGAGAGACTGCCCAAACAACGACAGAGACTGCGGAGAAGCCCTTCACAGCCGTGTACTGTCGGAAGGGGGACAGAGGCTGTCATTTGAATTCCATGAATTTGTGAACCGCAGCACATTCCGACGGCAGGGACCTGGAGGGGTCTGGGCACGCCGTGTTGTGTTTGTTTTTTTTTATTGCGCAGGCGCTTTTGGGATTGTGTCGGAAAAGTATAGTGATGACACAAGGGAGAAAATAATATGCTATTTGGCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q61097	Kinase suppressor of Ras 1 OS=Mus musculus OX=10090 GN=Ksr1 PE=1 SV=1
Q6VAB6	Kinase suppressor of Ras 2 OS=Homo sapiens OX=9606 GN=KSR2 PE=1 SV=2
Q3UVC0	Kinase suppressor of Ras 2 OS=Mus musculus OX=10090 GN=Ksr2 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF13543 all species →	SAM_KSR1	SAM like domain present in kinase suppressor RAS 1	Domain	Interproscan
PF20406 all species →	SAM_KSR1_N	Kinase suppressor RAS 1 N-terminal helical hairpin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR050167 all species →	Family	Serine/threonine-protein kinase	Interproscan
IPR025561 all species →	Domain	Kinase suppressor of RAS, SAM-like domain	Interproscan
IPR046861 all species →	Domain	Kinase suppressor RAS 1, N-terminal helical hairpin	Interproscan
IPR046933 all species →	Homologous_superfamily	Kinase suppressor RAS 1, N-terminal helical hairpin superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23257 all species →	SERINE-THREONINE PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0007265 all species →	Biological Process	Ras protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g19535.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g19535.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.