Gene detail

Detailed information of g19546.t1.1 in Haliclystus octoradiatus

Genomic Location: not available for this species
NR annotation: XP_032236770.1, elongation factor Tu [Nematostella vectensis]
Species abbreviation HOCTO · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6Q1L5	Elongation factor Tu OS=Nitratiruptor sp. (strain SB155-2) OX=387092 GN=tuf PE=3 SV=1
Q727D5	Elongation factor Tu OS=Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough) OX=882 GN=tuf PE=3 SV=1
A1VAK4	Elongation factor Tu OS=Nitratidesulfovibrio vulgaris (strain DP4) OX=391774 GN=tuf PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003939 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03143 all species →	GTP_EFTU_D3	Elongation factor Tu C-terminal domain	Domain	Interproscan
PF00009 all species →	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF03144 all species →	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000795 all species →	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR050055 all species →	Family	Elongation factor Tu GTPase	Interproscan
IPR004160 all species →	Domain	Translation elongation factor EFTu/EF1A, C-terminal	Interproscan
IPR009001 all species →	Homologous_superfamily	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	Interproscan
IPR004541 all species →	Family	Translation elongation factor EFTu/EF1A, bacterial/organelle	Interproscan
IPR004161 all species →	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR033720 all species →	Domain	Elongation factor Tu, domain 2	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR041709 all species →	Domain	Elongation factor Tu (EF-Tu), GTP-binding domain	Interproscan
IPR031157 all species →	Conserved_site	Tr-type G domain, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43721 all species →	ELONGATION FACTOR TU-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003746 all species →	Molecular Function	translation elongation factor activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006414 all species →	Biological Process	translational elongation	Interproscan
GO:0070125 all species →	Biological Process	mitochondrial translational elongation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02358	tuf, TUFM; elongation factor Tu	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.