Detailed information of g1957.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_041329584.1, transcription elongation factor A protein 1 isoform X4 [Pyrgilauda ruficollis]
Species Calvadosia cruxmelitensis · all data for this species · gene families

 Sequence
Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q29RL9Transcription elongation factor A protein 1 OS=Bos taurus OX=9913 GN=TCEA1 PE=2 SV=1
P23193Transcription elongation factor A protein 1 OS=Homo sapiens OX=9606 GN=TCEA1 PE=1 SV=2
Q4KLL0Transcription elongation factor A protein 1 OS=Rattus norvegicus OX=10116 GN=Tcea1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002181 (this species only)
Orthogroup (gene family)OG0006396 (this species only)
Orthogroup (gene family)OG0059789 (this species only)
Orthogroup (gene family)OG0174304 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07500
all species →		TFIIS_MTranscription factor S-II (TFIIS), central domainDomainInterproscan
PF01096
all species →		TFIIS_CTranscription factor S-II (TFIIS)DomainInterproscan
PF08711
all species →		Med26TFIIS helical bundle-like domainDomainInterproscan
PF03382
all species →		DUF285Mycoplasma protein of unknown function, DUF285RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001222
all species →		DomainZinc finger, TFIIS-typeInterproscan
IPR003618
all species →		DomainTranscription elongation factor S-II, central domainInterproscan
IPR035100
all species →		FamilyTranscription elongation factor, IIS-typeInterproscan
IPR036575
all species →		Homologous_superfamilyTranscription elongation factor S-II, central domain superfamilyInterproscan
IPR003617
all species →		DomainTranscription elongation factor, TFIIS/CRSP70, N-terminal, sub-typeInterproscan
IPR017923
all species →		DomainTranscription factor IIS, N-terminalInterproscan
IPR035441
all species →		Homologous_superfamilyTFIIS/LEDGF domain superfamilyInterproscan
IPR039181
all species →		FamilyEIG121-likeInterproscan
IPR005046
all species →		FamilyProtein of unknown function DUF285Interproscan
IPR011889
all species →		RepeatBacterial surface protein 26-residue repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11477
all species →		TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEINInterproscan
PTHR22727
all species →		PROTEIN CBG13728Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006351
all species →		Biological ProcessDNA-templated transcriptionInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0016021
all species →		Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03145TFIIS; transcription elongation factor S-II-Transcription machineryko03021deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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