Gene detail

Detailed information of g1957.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_041329584.1, transcription elongation factor A protein 1 isoform X4 [Pyrgilauda ruficollis]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q29RL9	Transcription elongation factor A protein 1 OS=Bos taurus OX=9913 GN=TCEA1 PE=2 SV=1
P23193	Transcription elongation factor A protein 1 OS=Homo sapiens OX=9606 GN=TCEA1 PE=1 SV=2
Q4KLL0	Transcription elongation factor A protein 1 OS=Rattus norvegicus OX=10116 GN=Tcea1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07500	TFIIS_M	Transcription factor S-II (TFIIS), central domain	Domain	Interproscan
PF01096	TFIIS_C	Transcription factor S-II (TFIIS)	Domain	Interproscan
PF08711	Med26	TFIIS helical bundle-like domain	Domain	Interproscan
PF03382	DUF285	Mycoplasma protein of unknown function, DUF285	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001222	Domain	Zinc finger, TFIIS-type	Interproscan
IPR003618	Domain	Transcription elongation factor S-II, central domain	Interproscan
IPR035100	Family	Transcription elongation factor, IIS-type	Interproscan
IPR036575	Homologous_superfamily	Transcription elongation factor S-II, central domain superfamily	Interproscan
IPR003617	Domain	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	Interproscan
IPR017923	Domain	Transcription factor IIS, N-terminal	Interproscan
IPR035441	Homologous_superfamily	TFIIS/LEDGF domain superfamily	Interproscan
IPR039181	Family	EIG121-like	Interproscan
IPR005046	Family	Protein of unknown function DUF285	Interproscan
IPR011889	Repeat	Bacterial surface protein 26-residue repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11477	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR22727	PROTEIN CBG13728	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016021	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03145	TFIIS; transcription elongation factor S-II	-	Transcription machinery	ko03021	deepkoala