Detailed information of g1964.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH3110970.1, unnamed protein product [Porites lobata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O88480Calcineurin-binding protein cabin-1 OS=Rattus norvegicus OX=10116 GN=Cabin1 PE=1 SV=1
Q9Y6J0Calcineurin-binding protein cabin-1 OS=Homo sapiens OX=9606 GN=CABIN1 PE=1 SV=1
Q95SX7Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF21056ZSWIM1-3_RNaseH-likeZinc finger SWIM domain-containing protein 1/3, RNaseH-like domainDomainInterproscan
PF21599ZSWIM3_NZinc finger SWIM domain-containing protein 3, N-terminalDomainInterproscan
PF04434SWIMSWIM zinc fingerDomainInterproscan
PF21788TNP-like_GBDTNP-like, GTP-binding insertion domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR033053FamilyHistone transcription regulator 3/CABIN1Interproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR048324DomainZSWIM1/3, RNaseH-like domainInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR048325DomainZSWIM3, N-terminal domainInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR052579FamilyZinc finger SWIM domain-containing proteinInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR007527DomainZinc finger, SWIM-typeInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR048366DomainTransposable element P transposase-like, GTP-binding insertion domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15502CALCINEURIN-BINDING PROTEIN CABIN 1-RELATEDInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR31569SWIM-TYPE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006325Biological Processchromatin organizationInterproscan
GO:0031491Molecular Functionnucleosome bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

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