Detailed information of g19702.t2 in Acropora digitifera

Genomic Location: chr9Alt:9931344...9950129
NR annotation: XP_029191979.2, GATOR complex protein DEPDC5-like isoform X2 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O75140GATOR1 complex protein DEPDC5 OS=Homo sapiens OX=9606 GN=DEPDC5 PE=1 SV=2
P61460GATOR1 complex protein DEPDC5 OS=Mus musculus OX=10090 GN=Depdc5 PE=1 SV=2
Q9W0E3GATOR complex protein Iml1 OS=Drosophila melanogaster OX=7227 GN=Iml1 PE=1 SV=2
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF19418
all species →
DEPDC5_CTDDEPDC5 protein C-terminal regionFamilyInterproscan
PF12257
all species →
IML1Vacuolar membrane-associated protein Iml1 FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000591
all species →
DomainDEP domainInterproscan
IPR036388
all species →
Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR036390
all species →
Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR045838
all species →
DomainDEPDC5, C-terminalInterproscan
IPR027244
all species →
FamilyVacuolar membrane-associated protein Iml1Interproscan
IPR048255
all species →
DomainVacuolar membrane-associated protein Iml1, N-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13179
all species →
DEP DOMAIN CONTAINING PROTEIN 5Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0035556
all species →
Biological Processintracellular signal transductionInterproscan
GO:0005096
all species →
Molecular FunctionGTPase activator activityInterproscan
GO:0005765
all species →
Cellular Componentlysosomal membraneInterproscan
GO:0010508
all species →
Biological Processpositive regulation of autophagyInterproscan
GO:0034198
all species →
Biological Processcellular response to amino acid starvationInterproscan
GO:1904262
all species →
Biological Processnegative regulation of TORC1 signalingInterproscan
GO:1990130
all species →
Cellular ComponentGATOR1 complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K20404DEPDC5, SEA1; SEA/GATOR complex protein SEA1/DEPDC5-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g19702.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples
0TPM > 0
1Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Coral branch 39 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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