Genomic Location: chr9Alt:9931344...9950129
NR annotation: XP_029191979.2, GATOR complex protein DEPDC5-like isoform X2 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families
| CDS |
| g19702.t2 |
| Transcript |
| chr9Alt.g19702.t2 |
| Protein |
| chr9Alt.g19702.t2 |
| UniProt accession | Description |
|---|---|
| O75140 | GATOR1 complex protein DEPDC5 OS=Homo sapiens OX=9606 GN=DEPDC5 PE=1 SV=2 |
| P61460 | GATOR1 complex protein DEPDC5 OS=Mus musculus OX=10090 GN=Depdc5 PE=1 SV=2 |
| Q9W0E3 | GATOR complex protein Iml1 OS=Drosophila melanogaster OX=7227 GN=Iml1 PE=1 SV=2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF19418 all species → | DEPDC5_CTD | DEPDC5 protein C-terminal region | Family | Interproscan |
| PF12257 all species → | IML1 | Vacuolar membrane-associated protein Iml1 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000591 all species → | Domain | DEP domain | Interproscan |
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR045838 all species → | Domain | DEPDC5, C-terminal | Interproscan |
| IPR027244 all species → | Family | Vacuolar membrane-associated protein Iml1 | Interproscan |
| IPR048255 all species → | Domain | Vacuolar membrane-associated protein Iml1, N-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13179 all species → | DEP DOMAIN CONTAINING PROTEIN 5 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0035556 all species → | Biological Process | intracellular signal transduction | Interproscan |
| GO:0005096 all species → | Molecular Function | GTPase activator activity | Interproscan |
| GO:0005765 all species → | Cellular Component | lysosomal membrane | Interproscan |
| GO:0010508 all species → | Biological Process | positive regulation of autophagy | Interproscan |
| GO:0034198 all species → | Biological Process | cellular response to amino acid starvation | Interproscan |
| GO:1904262 all species → | Biological Process | negative regulation of TORC1 signaling | Interproscan |
| GO:1990130 all species → | Cellular Component | GATOR1 complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K20404 | DEPDC5, SEA1; SEA/GATOR complex protein SEA1/DEPDC5 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of g19702.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Coral branch | 39 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM,
StringTie quantification over 39 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.