Gene detail

Detailed information of g1975.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MTI09701.1, N-acetylmuramoyl-L-alanine amidase [Curvivirga aplysinae]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P63884	N-acetylmuramoyl-L-alanine amidase AmiC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=amiC PE=3 SV=1
P63883	N-acetylmuramoyl-L-alanine amidase AmiC OS=Escherichia coli (strain K12) OX=83333 GN=amiC PE=1 SV=1
Q9K0V3	N-acetylmuramoyl-L-alanine amidase AmiC OS=Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58) OX=122586 GN=amiC PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000044 (this species only)
Orthogroup (gene family)	OG0002985 (this species only)
Orthogroup (gene family)	OG0032593 (this species only)
Orthogroup (gene family)	OG0059823 (this species only)
Ubiquitin family	DUB\|ULP\|ULP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11741 all species →	AMIN	AMIN domain	Family	Interproscan
PF01520 all species →	Amidase_3	N-acetylmuramoyl-L-alanine amidase	Domain	Interproscan
PF10458 all species →	Val_tRNA-synt_C	Valyl tRNA synthetase tRNA binding arm	Domain	Interproscan
PF00133 all species →	tRNA-synt_1	tRNA synthetases class I (I, L, M and V)	Domain	Interproscan
PF08264 all species →	Anticodon_1	Anticodon-binding domain of tRNA ligase	Domain	Interproscan
PF02902 all species →	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002508 all species →	Domain	N-acetylmuramoyl-L-alanine amidase, catalytic domain	Interproscan
IPR050695 all species →	Family	N-acetylmuramoyl-L-alanine amidase 3	Interproscan
IPR021731 all species →	Domain	AMIN domain	Interproscan
IPR037118 all species →	Homologous_superfamily	Valyl-tRNA synthetase, tRNA-binding arm superfamily	Interproscan
IPR033705 all species →	Domain	Valyl tRNA synthetase, anticodon-binding domain	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR019499 all species →	Domain	Valyl-tRNA synthetase, tRNA-binding arm	Interproscan
IPR010978 all species →	Homologous_superfamily	Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm	Interproscan
IPR009080 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR002300 all species →	Domain	Aminoacyl-tRNA synthetase, class Ia	Interproscan
IPR013155 all species →	Domain	Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding	Interproscan
IPR002303 all species →	Family	Valine-tRNA ligase	Interproscan
IPR003653 all species →	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30404 all species →	N-ACETYLMURAMOYL-L-ALANINE AMIDASE	Interproscan
PTHR11946 all species →	VALYL-TRNA SYNTHETASES	Interproscan
PTHR34718 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008745 all species →	Molecular Function	N-acetylmuramoyl-L-alanine amidase activity	Interproscan
GO:0009253 all species →	Biological Process	peptidoglycan catabolic process	Interproscan
GO:0000910 all species →	Biological Process	cytokinesis	Interproscan
GO:0030288 all species →	Cellular Component	outer membrane-bounded periplasmic space	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004832 all species →	Molecular Function	valine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006438 all species →	Biological Process	valyl-tRNA aminoacylation	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01448	amiABC; N-acetylmuramoyl-L-alanine amidase	EC:3.5.1.28	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.