Gene detail

Detailed information of g1980.t2 in Tripedalia maipoensis

Genomic Location: scaffold_11:19486...57765
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g1980.t2

ATGATGTACTTGGGAAGACACAACGTGGGTGACGGAGAATTAAGCGGCGAGGAGTCAGCGACTTCATTGCTTCACTCTGTGCGCCAGCAGTGCAAGATCAATTCAGATGTGGCAAGCATTTCAAGTGTGAGCGACACCGATGATTCCTTCGTATGGAGAGCAGACGCTGGCAGTAGCGTCGGAGACAGTGACCATGATGCCTTGCACTCGCACGATCTGATGGACTCCTACATCAAAGCTTTGGAAGAACGTGGAGTTATGCACCCAGGGGACATGAGAATCCAACCAGACTTCACAGAGAGCACTGTTACCTCGCGGACTGTGTCTGGCAACAAAATCACCAAGACGACCAAAACAGTGGTAAAGAGCAGCAGCAGCAACAACTATCAGTCGGTCAATGGACATGAAGAAGACGTGGACTTCGACCTTATGGCCGAAAATGTGGCCCTTACAAGTCACCATCAGCGTGGGAACTCTCTAAGCTCCAACACTTCGTCTCTGCGCAACGGATATACAAGTGAGCGCGCAGCCCTAATGAGGTCAGGATCAAACGCAAGCTCCATCGCGTCAGCCAGGGGTGGGGTTGATCCGCAGGGGTCCGCCTATAACACTGTGTCAACCTCAGTATTGGCAGATGGATCATTGGTTACGACTTACACTAGCAAGACCACCACAGTTCATGAGGATCCACTCTCCATAGACAGGCAACAGTTTGTCCGTGCATCTCCCGCGCTTTCTGCTTCGCACGGATCAGATCGTGATGCCTCGATTTCGCGTCATTACAATTCGTCCACGCACAACAGTTATAGCCACCAGAGCTATCAAAACGCGAGCACGTTACCACGACAACCCACTTCACTGGGTATGGATCCCTATGCCGGGCCTCGTTCAGCTACCTTACCTCGCCCGACAGAAAACTACCGTCCGGTAGCGTCGTCCACGCCGGAATCGCAAGTGCACGAGGAGGAACGCATCAATCCTGATGGATCGCGCGTGTATATCCGGAAAGTGGTAACGACCACCACGACCTGTACCACGGAGCCTGGAGAGGAATTTGTGGACGTCTCCGTGGTACCTGAGGTCCACTCCGCCTCATTTGACGAGACAACATACGGGAAGGAGACGGACGATGTGCAGTCTAGCCGTTTCGACCGAACGAGTACGTCGTCATTCCGAAGTGAGAGAAGCGAACGAAGCCACCGCTCCAACACGCCAAGACAACCTTACATTGCGCCATCGGGTCCAGGCTATTTCCGAGTGGCTGAAGGAGGACAGGTGGAGGAGAGGATCACGTCGACCTCGGCGTCGGTGGTGCATGGTGAGAACGAGGGCGGTAGCTTTCGACAGCGGTCGAGAACGCCGAGCCACTCAACTGATATTTTAGATGGCGAGCGATTGTCGCGGTCTGGACACGAGAGAGCATCCAACCGGTCTACTGAGAGTAGAGAGACTACCAGGTCGCGCACGCGCGGCGAATCCAACGAAACGTTCAAGACGGAAAGCTTCACTAAGAGTTCCAATGCAGACGATGTCATGCTGCAGGTTGTCACGAACATAACCCCCCCTGGAAGGTCATCTACACCACAGAACCGAGGCTACGTCGTTGAAGAAAGAGTGACGACTAAGAAAACAGTGACAGTTGAAGACGACGGTGATGAGATTAAAAAGAGGCCACCAAGTTACGGGGACTATGAAGATGGACCGCGGCATGGCTACGAAATCGATCTGCTGGACCTCCTTATGTTTCTGAAGACGGACGACGATGTCTTGAAAGCCAACGCTGCCGGCTACATCATGCATCTCTGTTACAACGACGAGGCTATAAAGATCAAGATGAGAGAATTGGATCTGATCCCACTCTTAGTACATTTGCTCGATCACCTCAGTGAAGACTGCCATCGGAATGCAGCTGGTGCTCTCAAAAACCTCAGTTTTGGACGATTCCTGGATGACAACAAGGCGGCCATTCAAGAATGCGGGGGCATACCGGCCTGTGCGCGCCTTCTGTACAGGACTAACTCCCTCGAAGTCCGGGAACACGTTTCTGGAATACTATATAACTTGTCATCATCCATGCACATCAAGGCTGAGATCCTGGAAGATGCAGTTGAAGCACTCTCTGTCCTCATCATCATTCCTCTTTCGGGATGGGAACGCCAGTCATACCTGGAAGACAGGCCACCCAGTATGGTTATTTGGTCTGTCCTTTTGCGCAACTCTACGGGCGTCTTGCGAAATGTGTCCTCTATCGGGCCGGAAGCGCGCGAAAAGCTGCGTCGCCAGGAAGGCTTGATAGATGCACTTGTTTGGATGTTAAGAGCTGCCATTGCCCAAGATAAGAATGACATCGACAACAAGATTGTGGAGAACACCGTGTGCATTTTACGAAACATCTCGTACAAGCTTGACTTGGAGGTGGATCGTGAGTTGTACCCTGATGCCGTAAAGGTCATCAGCGAAGCTGAAGAAGAGCCGCAAGCGGAATTCAAGGCGGCCCCAAAGCAGGACCGAAGCCGAACCCCCCCTGAGAAACCCCATGACGCCGCTACCACGGGCTGCCTGTACATGAAGAAAAAGCCCCCGGGGACCGGTCGCCGAAAGCTGTCGCTGCGAAGGAAGAGTGCCAAGCCGGCAGCTGAACTGGTTGAGCAATACAAGAAACCGGACCAGGGAGAGCACACTATGGGTGTGGCCTTGCTATGGGAGCCAGAGACTGTATCCTTGTACATTTATTTGATCGATAAATCGAATAATTCGTTCACGTTGGAGGGTGCCTGTGGAGCAGTGCACAATCTGTGTGCTGGAAACTGGAATTGGTCTGCGCTTCTGCGTGCGCACATTCGTCGAGAGCGAGGTTTGCCCCCTATCAACGAACTCCTCACGGTAGAGCAAGAGTACATTGTGCGTGCAGCGGCGTTAGCACTGCGCAACTTGGCCATCGACAAGAAGAACAAGGGACTCATCGGGCGGTACGCTATGAAGGAGTTGCTGGCTGTGCTTCCACCACCACACACCCCGGAGGATAGCCTGGACCCCACTGATTACACCATTGTGGCACTGCTTGGTACCATTGGTGTGGTGTTACACGGGCACCTTGAGAACTGCCAGTTTTTCCGTGACAGCGGGGGAATTCCCAAAGTGATGGCTTTAACGAGGGAGCCGGATCCCAAGAGGGAGAAGCCCCTCCGCATTTATTCACAGCGTGTAGTCCTGGAGGCGAACAGGGTGCTTCTTTACGCATGGGAGTTCAAGGAACTACAGGCAACGATCAAAAAAGGCTTCTGGTCGCACAGTAAGGCACTGGAGGAAGAACGCGCCTTCAAGAATGCCACGCTTAAGCAGCCCAAAAAGCAAGGAGACACCGTAGCCGAACTTGAAGACGAGGCCGCTCAACTGGGCACACTTCCGCGTGATAACCGCAGGTTTGTCACGGTCACGGATGAAGAACCGGCCCGGAAGTCTTCTATTGAAAAAGCTCCTCCCTCTCCCTCCACACCAAAGTTCGACGTAGCCCCCTCTCCCGGTCTCCAAGGGAACAACTTTGAGATGCACCCCATTGACCACCCGCCACACTATATCGACGACGAAGAGGCGCCTGGAGCAGAGCAAAAACCGCTTATTGGGGGTAAGAAAGACCGGACAGGAAGCGGATCCGATGTGGACGAACGGGCGCCTCTCTACGCCAAGGTCGACAAAGGCAAGAAGAGCGGAAAGAGCGGGAAAAGTGGCGAGGGTAAAGCTGACTCGTGGGTGTGA

Transcript

g1980.t2

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR028435 all species →	Family	Plakophilin/Delta catenin	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10372 all species →	PLAKOPHILLIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0007043 all species →	Biological Process	cell-cell junction assembly	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g1980.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.