Gene detail

Detailed information of g19809.t1 in Montipora capitata

Genomic Location: Sc0001077:19719...47663
NR annotation: XP_029184998.2, adenylate kinase isoenzyme 5-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g19809.t1

atgacggcggaagaaagtaaggaatacatggcaaagacggaggtccaccagctgtttgaggggatgcttactgggcttctttatcataaaccaaaggatcctttggcgtttctggaaaattgtatctcccttgcaaaaaccggaaaggacataaaatggaacacattccttgacgtcagcaagaaaccactgcctcccataccaaaaactgatggtcctatcaaagctgaagctgcagtggatgaagtgcgcacatttgccactgaatcagagatgaaagtcaaacaaccacttccaccaatcaatttgtctggtgcccgtgtgtcagttgacagtgacaaggagttgacagaaaagaatattctcacatctgaatcagaggaggaagttgaagtggagttttctggtcagaggattgtttttgttcttgggggaccaggatctggcaagggaacacagtgcactaaaattgttgatgagtttggctacgtccacctgtcagcaggtgaccttttgagacaggaggtagccaggggaagtgcaaggggacaaatgattgaagatattatgaaggagggaagactagtacctcaggagataaccattcagcttataagagatgccatgaggcaacacaaggattgtcctggattccttattgatggttttcccagagaaattcaacagagtgtacagtttgaactggaggtcgttggaagtgacttcctcctattctttgagtgcagtgaagaggtgatggaagagagattactcaagcgcagtaagactagtggacgagctgatgacaacattgaaactataaagaaacgatttggaacttttgtggaaaaaacattacctgtcattgattattatggacaacacaacaaagtagaaaagattgatgctaatcgtggtgtggatgaagtattcactgacgtgcgtttgttatttggtgctcttccggctaaggatccgcagaaaatcaagagaaagaaaaaaagagttgcagcttctaatgaggtgcaagaggaagaaagtctaaagttttctgggcaacggatagttttcgtattgggaggtcctggctcaggtaaaggaacccagtgtaagcgtattgtggagaagtttggttacactcacctatcaactggggatttactgagagctgaggttgacattggaagagaaagagggcagaggatcgctcagttaatgcaagaaggcaaacttgttcctcaggaacttgtgattgagcttttgacagatgtgatgttgcagtttccagattcacccggatttcttatcgatggatttccgcgcaagccatctcaaggcgttcagtttgaacaagaagtaacagaatgccattttgtattgttcttcgaatgcagtgaagcagtgatggaagaaagactgatcaagcgcggaaagacaagcggcagggtggacgataacgcggagaccatcaggaaacgcttcaacacgtttgtgaaggaaactataccggttatacagaactatgaagaaaaaaacaaagtcaaacgggtggacgctactcgttctgtagatgaagttttcgctgatgtatgtgctatctttggtgatcttccgaaacttgaaaggcagagaaaaaataaagtcaaacaggtcgagagcgattcggaatccgatgatcttgccgaagctgttgatgacttgtcccgagtagtggaaggaaagccgatcaaactccttcggaagaaaaaaaagcatccgcaacctgaagagaaaccaagatcgccggttttcgaacagccgattgttgccgaagagtttattcctctaatggatgacacgatcgcaaaaaccgacggaaagggactgttgaatgtcagagttatattcgttataggaggccctggttctggaaagggaacacaatgcgcgaggattgtagataagtttggttatacccacttatctaccggggacttgttgagagatgaagtacagtctggttcaccaagaagcaaggaactggtggaaatcatggaaaaaggacaacttattcctacgagaattgtccttgaactactgcgagtcgccatggtgggaactccaaacaccaaagggtttattgtggacggttttcccagagaactggaacaaggaaaagaatttgagaatgagatagcagcttgtgaatttgtgctttatttcgaatgttctccgaaaacgatgaaaagacgacttttggcaagaggagaaaccagcggtcgagtcgacgacaatgaagaaacgattgataaacgactggagacttttgaaaatcaaacaaagccagtgattgattactatgactcacgaaataaattgaaaaaggttctagcggaagcttcccctgatgaagttttcactcaagttaatgatatatttgggaatcttccaaaccgaaaatcaacgtcacttcatggttatgacgtcacctttataacaggtccgccaggctcgggaaaagccgagttgggaaagactttatcagaagcgactgggaaaactcatttatcagttggacatttgctcagacaggaagcgaggaaggacacagagcgatctcagttgatcaatcaagcaattttgatgggaagattagttgcttcgggaatcgttcttgcagtacttctagaggcactggaaaacgaggaaaagaatttggatggttattgcatagatggctatccgcggacaattgaacaattggatgaatttaaacaaaaggtgtcagagtataacagaatcgttgtgatagaaagtactaacgaagacatggagcgaatggtgaaagaacgagctgaaatattgaaacgagaagacgataaggaagaaatttcaagggctaaaataaaggtctacaatgaaaccactgggcccatgatcgacagcttgggagacgccgataaagctgtcaaggtgtctgcgtcacttcccaaagatgaacttctagacaggatccaaactcagctgagtaaagaagaataa

Transcript

g19809.t1

ATGACGGCGGAAGAAAGTAAGGAATACATGGCAAAGACGGAGGTCCACCAGCTGTTTGAGGGGATGCTTACTGGGCTTCTTTATCATAAACCAAAGGATCCTTTGGCGTTTCTGGAAAATTGTATCTCCCTTGCAAAAACCGGAAAGGACATAAAATGGAACACATTCCTTGACGTCAGCAAGAAACCACTGCCTCCCATACCAAAAACTGATGGTCCTATCAAAGCTGAAGCTGCAGTGGATGAAGTGCGCACATTTGCCACTGAATCAGAGATGAAAGTCAAACAACCACTTCCACCAATCAATTTGTCTGGTGCCCGTGTGTCAGTTGACAGTGACAAGGAGTTGACAGAAAAGAATATTCTCACATCTGAATCAGAGGAGGAAGTTGAAGTGGAGTTTTCTGGTCAGaggattgtttttgttcttgGGGGACCAGGATCTGGCAAGGGAACACAGTGCACTAAAATTGTTGATGAGTTTGGCTACGTCCACCTGTCAGCAGGTGACCTTTTGAGACAGGAGGTAGCCAGGGGAAGTGCAAGGGGACAAATGATTGAAGATATTATGAAGGAGGGAAGACTAGTACCTCAGGAGATAACCATTCAGCTTATAAGAGATGCCATGAGGCAACACAAGGATTGTCCTGGATTCCTTATTGATGGTTTTCCCAGAGAAATTCAACAGAGTGTACAGTTTGAACTGGAGGTCGTTGGAAGTGACTTCCTCCTATTCTTTGAGTGCAGTGAAGAGGTGATGGAAGAGAGATTACTCAAGCGCAGTAAGACTAGTGGACGAGCTGATGACAACATTGAAACTATAAAGAAACGATTTGGAACTTTTGTGGAAAAAACATTACCTGTCATTGATTATTATGGACAACACAACAAAGTAGAAAAGATTGATGCTAATCGTGGTGTGGATGAAGTATTCACTGACGTGCGTTTGTTATTTGGTGCTCTTCCGGCTAAGGATCCGCAGAAaatcaagagaaagaaaaaaagagttgCAGCTTCTAATGAGGTGCAAGAGGAAGAAAGTCTAAAGTTTTCTGGGCAACGGATAGTTTTCGTATTGGGAGGTCCTGGCTCAGGTAAAGGAACCCAGTGTAAGCGTATTGTGGAGAAGTTTGGTTACACTCACCTATCAACTGGGGATTTACTGAGAGCTGAGGTTGACATTGGAAGAGAAAGAGGGCAGAGGATCGCTCAGTTAATGCAAGAAGGCAAACTTGTTCCTCAGGAACTTGTGATTGAGCTTTTGACAGATGTGATGTTGCAGTTTCCAGATTCACCCGGATTTCTTATCGATGGATTTCCGCGCAAGCCATCTCAAGGCGTTCAGTTTGAACAAGAAGTAACAGAATGCCATTTTGTATTGTTCTTCGAATGCAGTGAAGCAGTGATGGAAGAAAGACTGATCAAGCGCGGAAAGACAAGCGGCAGGGTGGACGATAACGCGGAGACCATCAGGAAACGCTTCAACACGTTTGTGAAGGAAACTATACCGGTTATACAGAactatgaagaaaaaaacaaagtcaaacGGGTGGACGCTACTCGTTCTGTAGATGAAGTTTTCGCTGATGTATGTGCTATCTTTGGTGATCTTCCGAAACTTGAAAGgcagagaaaaaataaagTCAAACAGGTCGAGAGCGATTCGGAATCCGATGATCTTGCCGAAGCTGTTGATGACTTGTCCCGAGTAGTGGAAGGAAAGCCGATCAAACTCcttcggaagaaaaaaaagcatCCGCAACCTGAAGAGAAACCAAGATCGCCGGTTTTCGAACAGCCGATTGTTGCCGAAGAGTTTATTCCTCTAATGGATGACACGATCGCAAAAACCGACGGAAAGGGACTGTTGAATGTCAGAGTTATATTCGTTATAGGAGGCCCTGGTTCTGGAAAGGGAACACAATGCGCGAGGATTGTAGATAAGTTTGGTTATACCCACTTATCTACCGGGGACTTGTTGAGAGATGAAGTACAGTCTGGTTCACCAAGAAGCAAGGAACTGGTGGAAATCATGGAAAAAGGACAACTTATTCCTACGAGAATTGTCCTTGAACTACTGCGAGTCGCCATGGTGGGAACTCCAAACACCAAAGGGTTTATTGTGGACGGTTTTCCCAGAGAACTGGAACAAGGAAAAGAATTTGAGAATGAGATAGCAGCTTGTGAATTTGTGCTTTATTTCGAATGTTCTCCGAAAACGATGAAAAGACGACTTTTGGCAAGAGGAGAAACCAGCGGTCGAGTCGACGACAATGAAGAAACGATTGATAAACGACTGGAGACTTTTGAAAATCAAACAAAGCCAGTGATTGATTACTATGACTCACgaaataaattgaaaaagGTTCTAGCGGAAGCTTCCCCTGATGAAGTTTTCACTCAAGTTAATGATATATTTGGGAATCTTCCAAACCGAAAATCAACGTCACTTCATGGTTATGACGTCACCTTTATAACAGGTCCGCCAGGCTCGGGAAAAGCCGAGTTGGGAAAGACTTTATCAGAAGCGACTGGGAAAACTCATTTATCAGTTGGACATTTGCTCAGACAGGAAGCGAGGAAGGACACAGAGCGATCTCAGTTGATCAATCAAGCAATTTTGATGGGAAGATTAGTTGCTTCGggAATCGTTCTTGCAGTACTTCTAGAGGCACTGGAAAACGAGGAAAAGAATTTGGATGGTTATTGCATAGATGGCTATCCGCGGACAATTGAACAATTGGATGAATTTAAACAAAAGGTGTCAGAGTATAACAGAATCGTTGTGATAGAAAGTACTAACGAAGACATGGAGCGAATGGTGAAAGAACGAGCTGAAATATTGAAACGAGAAGACGATAAGGAAGAAATTTCAAGGGCTAAAATAAAGGTCTACAATGAAACCACTGGGCCCATGATCGACAGCTTGGGAGACGCCGATAAAGCTGTCAAGGTGTCTGCGTCACTTCCCAAAGATGAACTTCTAGACAGGATCCAAACTCAGCTGAGTAAAGAAGAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IFD0	Adenylate kinase isoenzyme 5 OS=Bos taurus OX=9913 GN=Ak5 PE=2 SV=1
Q9Y6K8	Adenylate kinase isoenzyme 5 OS=Homo sapiens OX=9606 GN=AK5 PE=1 SV=2
Q920P5	Adenylate kinase isoenzyme 5 OS=Mus musculus OX=10090 GN=Ak5 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006284 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00406 all species →	ADK	Adenylate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000850 all species →	Family	Adenylate kinase/UMP-CMP kinase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006266 all species →	Family	UMP-CMP kinase	Interproscan
IPR033690 all species →	Conserved_site	Adenylate kinase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23359 all species →	NUCLEOTIDE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0019205 all species →	Molecular Function	nucleobase-containing compound kinase activity	Interproscan
GO:0004127 all species →	Molecular Function	(d)CMP kinase activity	Interproscan
GO:0006207 all species →	Biological Process	'de novo' pyrimidine nucleobase biosynthetic process	Interproscan
GO:0006221 all species →	Biological Process	pyrimidine nucleotide biosynthetic process	Interproscan
GO:0009041 all species →	Molecular Function	UMP/dUMP kinase activity	Interproscan
GO:0004017 all species →	Molecular Function	adenylate kinase activity	Interproscan
GO:0004550 all species →	Molecular Function	nucleoside diphosphate kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006165 all species →	Biological Process	obsolete nucleoside diphosphate phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00939	adk, AK; adenylate kinase	EC:2.7.4.3	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g19809.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

47TPM > 0

3Conditions

151.6Max TPM

32.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	20	29.57	139.01
whole organisms · low pH treatment	15	15	32.50	141.36
whole organisms · extra low pH treatment pH treatment	12	12	36.16	151.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	139.01
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	112.79
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	101.14
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	57.80
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	53.38
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	42.22
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	34.22
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	12.90
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	10.76
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	10.75
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	10.22
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	10.05
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	9.35
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	3.28
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	3.13
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	2.66
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	2.29
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	2.16
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	1.67
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	1.13
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.00
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	141.36
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	137.61
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	136.28
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	12.31
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	11.73
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	10.74
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	9.89
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	9.76
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	8.46
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	2.70
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	1.90
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	1.55
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	1.50
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	1.09
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.70
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	151.65
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	121.19
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	115.80
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	11.54
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	8.73
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	8.64
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	7.98
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	2.41
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	1.92
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	1.66
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	1.54
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.88

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.