Gene detail

Detailed information of g19827.t1.1 in Dendrophyllia cribrosa

Genomic Location: :...
NR annotation: CAH3167580.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

g19827.t1

ATGATGAAAGTCAAGCAATCTTTTGGAGCCTTCGTGCTCTTTGTGATGCTTCAAGGAGCAACATTGGAAACAACTGAAGCAgCGGTGCGACAGAAGAGAGTAGTCAACATGAACGCCTTTTCCAATGACTTCAACAAGTGTCTGTTCAATTACTGGACAACTTTTGTTGAAAAAAACAGCCCCGTCCTTGGAAAGGCTGTTAAGTGTAAAGGAATACAGCTCTGTTATGGCGCCAATCCTGCTAGAGCACAGTTTGCTGTTTGCTACAACAAGCAAACACTTATTCCGGAATTCACGGGACACGTGTTACAGCCAAATATCCCGGAAGGCGGAGGCAGAGATGAGGGAGGCTTTAGGAGCGACCCTACAGTTGACCCAGTAGCAGTTGATGCTGACTACGCTGCCAATCAAGCCACACTTTACGACAATTACAACAAACTTGCCAACCAGTTCTGTTCCAGAGGTCATCTGACTCCAAATGCGGATTTTGCAACCCCCGATGCGCGTTCCTACACCATGGTAACAACCAACATTGCACCACAGTGGCAGGCGTTTAACGGAGGCAACTGGGGTGAACTGGAAAAGGCTCTTAGAAATTATGCAACTCGAGAGAATCACGCCCTGTTTATGGTCACTGGCACAAgtggcaaggcaaaaaattcaaatggtGCGGATATCCTTTTGAACGGACGAGTTCTGGCGCCAGCATACTACTGGAAGTCTGTATGTGACCCAGTTCATAAGCAGTCTATTTTCTTCTTTGCTGTTAACAACATCGGCAACGCACGGgttgataaaaaggaaatagGCTGCTTCAACAAGTTACAAACGCAGAAACTGGGTATAATACAGTGCAGCAGCATGGACGAAGCTAAAGCCTTGGGAATCTTTCAACAGTTGCCAGATTTCCTCCCAAAAAGTTGTCAACCTTCTATAAAAGAGCAGAAAGAACAGAAGGCATTTTTTTCATCCCTTAGTTCATCATTGGACTCATTTCCTCAGCAATACTGTAAGCACAGAATCCTTCCACAGCTGCTCAATGCTTTTGAATATGGATCAGCAGGTTCTGCTGTACTGGGACCACTCTTCAAAGTTGGTAAACTCTTGGATACAGATGAATACCAACAAAAGATAGTGCCATGTGTTGTTAAACTGTTTTCATCAACAGACCGAGCTACACGCATTCACTTACTACAACAGCTTGATAACTTTGTGCAGCACCTGAAGCCATCAACTGTTGATGAGCAGATCTTTCCTCATGTTGCTCTGGGTTTCGGTGACACAATCCCCGCTATGAGAGAACAGACAGTCAAGtcCATGCTACTTCTTGCTCCTAAGTTAAGTGAGAAAACAATCAACAATCAGCTGCTGAAATACTTTGCTAAACTTCAAATGGACCAAGAGGCTGGTATCAGAACAAACACTACAGTCTGTCTAGGAAAAATTGCCGTGAATCTTCCTCCCGCTACCCGTCAAAAAGTGTTGATCCCTGCCTTCTTGCGTGCTTTGCGGGATCCATTCCCTCCCGCCCGTACAGCTGGAGTTATGGGCTTCCTTGCCTCTGTGGAGTTTTTCAGTTTAAAGGACTGTGCCATAAAAATCTTACCTGCCTTGTGTACCCTTTCAATGGACCCTGAACGTAAAGTCAGGGATCAGGTTTTCAAAGTGATCAAGCTGCTTCTGGTTAAATTGGAGAAAGCTTCAGAAGACCCAGAGTCTGCTGTGAACCAAGCGGTTGCAGATCAAACTGCTGAATCAGCTGCTGGTGGTGGTTCATCTTGGACAGGATGGGCTGTCAGCTCACTAACATCCAAACTCTATCGAGGAGGAAACACGCCTGCTGGGACTGCCACTGAACCTGACAAGAATACACCAGCTGACAAAGATAAAAACCCAGACCCAACAAAGGTCAGTGAGAAAACAACGGAAGCCTGTCCAGAAACTACACAATCaaccataaaagaaaagaaTGAAGACTCGGGAAGTGATTACGGAGGGGACTGGAGCGAGGACGAGTGGAATGATGCACAAGAACCTTGCATAGATGAACTAAAAAGCGACCTTTTAGCAGCAAAAGAAGAAATTGCAGTATTTCAGAGTGGAAAGAAAGAACCATCTCTCAGACGTCCTGCAAACCTTGCGGCCGATTTAGACGGGAGGGAGAGTGGTAGCGACTATGGTGATTGGGAGAATGACGATTGGTCTGTGGACAGCTTTACCACCCCTTCTACAATGAGTAAAGCATCACACAACAAACCACATCAAAATACTAAGACTTCACAGCAAGCTAGAGGCAGCACAAAGCAAAAGACGTCTTCACGTGCTGACGAAGAAACAATGATATCAGAGATGTTAGGGGAAGCCTGCAGTCCGCCCACTGTGCCGGACAGCGGCTGGGACGAAGACTTTTTTGCTCCGAAGGTGAAAAATAAAACCGCTATGACAGGTAGATCCGGAATCTCAAACCCTCCTCAAAAGAGCAAAAACAAGCCAGCCCAATCTAAACACACTGAAGGGGACACGTGGGATGTAGGGGACTGGGGATCATTCGACCAGTCACCTCTGACCAGCAGTGCCCCTGCTGAAGAATCCCAGCCCCAAAAGACCCCGGATGATGGGTGGGGTGGAGATGAGTGGGGTATGGAGGACTGGGGGCAAGAAAAACCTAGTAAAACAGAACTTgcgaaaaagaaaagagaagaaagGCGGCAGAGACTGCAGGCTCAGAAAGATAAACGAGCTGCGGGAGGAAAGGGACCTTTGAAACTTGGTGCAGTGAAAATGCAGTGA

Transcript

g19827.t1

Protein

Uniprot

Uniprot term	Description
Q9EQC5	N-terminal kinase-like protein OS=Mus musculus OX=10090 GN=Scyl1 PE=1 SV=1
Q5M9F8	N-terminal kinase-like protein OS=Rattus norvegicus OX=10116 GN=Scyl1 PE=2 SV=1
A6QLH6	N-terminal kinase-like protein OS=Bos taurus OX=9913 GN=SCYL1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01223	Endonuclease_NS	DNA/RNA non-specific endonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051177	Family	Catalytically Inactive Kinase-Related Protein	Interproscan
IPR044925	Homologous_superfamily	His-Me finger superfamily	Interproscan
IPR044929	Homologous_superfamily	DNA/RNA non-specific endonuclease superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR020821	Domain	Extracellular Endonuclease, subunit A	Interproscan
IPR001604	Domain	DNA/RNA non-specific endonuclease	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12984	SCY1-RELATED S/T PROTEIN KINASE-LIKE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08876	SCYL1; SCY1-like protein 1	-	Transfer RNA biogenesis	ko03016	deepkoala