Gene detail

Detailed information of g2.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_127764074.1, ASKHA domain-containing protein [Hwanghaeella grinnelliae]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0DX10	Corrinoid activation enzyme RamQ OS=Eubacterium limosum OX=1736 GN=ramQ PE=1 SV=1
P0DX08	Methylcorrinoid:tetrahydrofolate methyltransferase OS=Eubacterium limosum OX=1736 GN=mtqA PE=1 SV=1
A6H5Y3	Methionine synthase OS=Mus musculus OX=10090 GN=Mtr PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only)
Orthogroup (gene family)	OG0000220 (this species only)
Orthogroup (gene family)	OG0001666 (this species only)
Orthogroup (gene family)	OG0002898 (this species only)
Orthogroup (gene family)	OG0004230 (this species only)
Orthogroup (gene family)	OG0005851 (this species only)
Orthogroup (gene family)	OG0006227 (this species only)
Orthogroup (gene family)	OG0007396 (this species only)
Orthogroup (gene family)	OG0007795 (this species only)
Orthogroup (gene family)	OG0010823 (this species only)
Orthogroup (gene family)	OG0015080 (this species only)
Orthogroup (gene family)	OG0021361 (this species only)
Orthogroup (gene family)	OG0041205 (this species only)
Orthogroup (gene family)	OG0171763 (this species only)
Orthogroup (gene family)	OG0172366 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01144 all species →	CoA_trans	Coenzyme A transferase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF18701 all species →	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan
PF14574 all species →	RACo_C_ter	C-terminal domain of RACo the ASKHA domain	Family	Interproscan
PF17651 all species →	Raco_middle	RACo middle region	Family	Interproscan
PF17650 all species →	RACo_linker	RACo linker region	Family	Interproscan
PF00809 all species →	Pterin_bind	Pterin binding enzyme	Domain	Interproscan
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF01798 all species →	Nop	snoRNA binding domain, fibrillarin	Family	Interproscan
PF09785 all species →	Prp31_C	Prp31 C terminal domain	Family	Interproscan
PF16017 all species →	BTB_3	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012791 all species →	Domain	3-oxoacid CoA-transferase, subunit B	Interproscan
IPR037171 all species →	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan
IPR004163 all species →	Binding_site	Coenzyme A transferase binding site	Interproscan
IPR012792 all species →	Domain	3-oxoacid CoA-transferase, subunit A	Interproscan
IPR004164 all species →	Active_site	Coenzyme A transferase active site	Interproscan
IPR004165 all species →	Family	Coenzyme A transferase family I	Interproscan
IPR014388 all species →	Family	3-oxoacid CoA-transferase	Interproscan
IPR051320 all species →	Family	Viral Replication and Maturation Polyprotein	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR040676 all species →	Domain	Domain of unknown function DUF5641	Interproscan
IPR000489 all species →	Domain	Pterin-binding domain	Interproscan
IPR027980 all species →	Domain	RACo, C-terminal	Interproscan
IPR011005 all species →	Homologous_superfamily	Dihydropteroate synthase-like superfamily	Interproscan
IPR041414 all species →	Domain	RACo-like, middle region	Interproscan
IPR040506 all species →	Domain	RACo linker region	Interproscan
IPR042259 all species →	Homologous_superfamily	RACo-like, middle domain superfamily	Interproscan
IPR052911 all species →	Family	Corrinoid activation enzyme	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR044574 all species →	Family	ATPase ARIP4-like	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR045260 all species →	Family	Guanine nucleotide-exchange factor Sec12-like	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR047147 all species →	Family	F-box only protein 5/43	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR039739 all species →	Family	RING-finger protein MAG2/RNF10	Interproscan
IPR002687 all species →	Domain	Nop domain	Interproscan
IPR012976 all species →	Domain	NOSIC	Interproscan
IPR036070 all species →	Homologous_superfamily	Nop domain superfamily	Interproscan
IPR042239 all species →	Homologous_superfamily	Nop, C-terminal domain	Interproscan
IPR027105 all species →	Family	U4/U6 small nuclear ribonucleoprotein Prp31	Interproscan
IPR019175 all species →	Domain	Prp31 C-terminal	Interproscan
IPR039886 all species →	Family	BTBD10/KCTD20	Interproscan
IPR039885 all species →	Domain	BTBD10/KCTD20, BTB/POZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13707 all species →	KETOACID-COENZYME A TRANSFERASE	Interproscan
PTHR33064 all species →	POL PROTEIN	Interproscan
PTHR42895 all species →	IRON-SULFUR CLUSTER-BINDING PROTEIN-RELATED	Interproscan
PTHR45797 all species →	RAD54-LIKE	Interproscan
PTHR23284 all species →	PROLACTIN REGULATORY ELEMENT BINDING PROTEIN	Interproscan
PTHR15493 all species →	F-BOX ONLY PROTEIN 5 AND 43	Interproscan
PTHR12983 all species →	RING FINGER 10 FAMILY MEMBER	Interproscan
PTHR13904 all species →	PRE-MRNA SPLICING FACTOR PRP31	Interproscan
PTHR21637 all species →	BTB/POZ DOMAIN-CONTAINING PROTEIN 10-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008410 all species →	Molecular Function	CoA-transferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0008260 all species →	Molecular Function	succinyl-CoA:3-oxo-acid CoA-transferase activity	Interproscan
GO:0046950 all species →	Biological Process	obsolete cellular ketone body metabolic process	Interproscan
GO:0046952 all species →	Biological Process	ketone body catabolic process	Interproscan
GO:0042558 all species →	Biological Process	pteridine-containing compound metabolic process	Interproscan
GO:0044237 all species →	Biological Process	obsolete cellular metabolic process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003400 all species →	Biological Process	regulation of COPII vesicle coating	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0009306 all species →	Biological Process	protein secretion	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0007088 all species →	Biological Process	regulation of mitotic nuclear division	Interproscan
GO:0045835 all species →	Biological Process	negative regulation of meiotic nuclear division	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0000244 all species →	Biological Process	spliceosomal tri-snRNP complex assembly	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005687 all species →	Cellular Component	U4 snRNP	Interproscan
GO:0046540 all species →	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan
GO:0097526 all species →	Cellular Component	spliceosomal tri-snRNP complex	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0042327 all species →	Biological Process	positive regulation of phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01027	OXCT; 3-oxoacid CoA-transferase	EC:2.8.3.5	Valine, leucine and isoleucine degradation	ko00280	deepkoala
K12844	PRPF31; U4/U6 small nuclear ribonucleoprotein PRP31	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.