Detailed information of g20.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_044431616.1, tRNA pseudouridine(38-40) synthase TruA [Skermanella aerolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q0ASJ7tRNA pseudouridine synthase A OS=Maricaulis maris (strain MCS10) OX=394221 GN=truA PE=3 SV=1
Q2WAT0tRNA pseudouridine synthase A OS=Paramagnetospirillum magneticum (strain ATCC 700264 / AMB-1) OX=342108 GN=truA PE=3 SV=1
Q07TX2tRNA pseudouridine synthase A OS=Rhodopseudomonas palustris (strain BisA53) OX=316055 GN=truA PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilyZBTB
Ubiquitin FamilyE3|E3 adaptor Cullin RING|BTB

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16686POT1PCssDNA-binding domain of telomere protection proteinDomainInterproscan
PF01416PseudoU_synth_1tRNA pseudouridine synthaseDomainInterproscan
PF08763Ca_chan_IQVoltage gated calcium channel IQ domainDomainInterproscan
PF16905GPHHVoltage-dependent L-type calcium channel, IQ-associatedFamilyInterproscan
PF10188Oscp1Organic solute transport protein 1FamilyInterproscan
PF15734MIIPMigration and invasion-inhibitoryFamilyInterproscan
PF16177ACAS_NAcetyl-coenzyme A synthetase N-terminusFamilyInterproscan
PF00852Glyco_transf_10Glycosyltransferase family 10 (fucosyltransferase) C-termFamilyInterproscan
PF17039Glyco_tran_10_NFucosyltransferase, N-terminalDomainInterproscan
PF14291DUF4371Domain of unknown function (DUF4371)FamilyInterproscan
PF05699Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan
PF01344Kelch_1Kelch motifRepeatInterproscan
PF07707BACKBTB And C-terminal KelchDomainInterproscan
PF00651BTBBTB/POZ domainDomainInterproscan
PF00069PkinaseProtein kinase domainDomainInterproscan
PF00385ChromoChromo (CHRromatin Organisation MOdifier) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR028389FamilyProtection of telomeres protein 1Interproscan
IPR032042DomainProtection of telomeres protein 1, ssDNA-binding domainInterproscan
IPR001406FamilyPseudouridine synthase I, TruAInterproscan
IPR020097DomainPseudouridine synthase I, TruA, alpha/beta domainInterproscan
IPR020103Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan
IPR020094Homologous_superfamilyPseudouridine synthase TruA/RsuA/RluB/E/F, N-terminalInterproscan
IPR020095Homologous_superfamilyPseudouridine synthase I, TruA, C-terminalInterproscan
IPR014873DomainVoltage-dependent calcium channel, alpha-1 subunit, IQ domainInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR031649DomainVoltage-dependent L-type calcium channel, IQ-associated domainInterproscan
IPR050599FamilyVoltage-dependent calcium channel alpha-1 subunitInterproscan
IPR019332FamilyOrganic solute carrier protein 1Interproscan
IPR031466FamilyMigration and invasion-inhibitory proteinInterproscan
IPR032387DomainAcetyl-coenzyme A synthetase, N-terminal domainInterproscan
IPR042099Homologous_superfamilyANL, N-terminal domainInterproscan
IPR001503FamilyGlycosyl transferase family 10Interproscan
IPR038577Homologous_superfamilyGT10-like, C-terminal domain superfamilyInterproscan
IPR031481DomainFucosyltransferase, N-terminalInterproscan
IPR025398DomainDomain of unknown function DUF4371Interproscan
IPR008906DomainHAT, C-terminal dimerisation domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR052958FamilyInterferon-induced PKR regulatorInterproscan
IPR006652RepeatKelch repeat type 1Interproscan
IPR015915Homologous_superfamilyKelch-type beta propellerInterproscan
IPR011333Homologous_superfamilySKP1/BTB/POZ domain superfamilyInterproscan
IPR011705DomainBTB/Kelch-associatedInterproscan
IPR000210DomainBTB/POZ domainInterproscan
IPR017096FamilyBTB-kelch proteinInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR008271Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR000953DomainChromo/chromo shadow domainInterproscan
IPR023779Conserved_siteChromo domain, conserved siteInterproscan
IPR023780DomainChromo domainInterproscan
IPR016197Homologous_superfamilyChromo-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14513PROTECTION OF TELOMERES 1Interproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR11142PSEUDOURIDYLATE SYNTHASEInterproscan
PTHR45628VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1Interproscan
PTHR21439OXIDORED-NITRO DOMAIN-CONTAINING PROTEINInterproscan
PTHR34831MIGRATION AND INVASION-INHIBITORY PROTEINInterproscan
PTHR11929ALPHA- 1,3 -FUCOSYLTRANSFERASEInterproscan
PTHR4628952 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATEDInterproscan
PTHR24412KELCH PROTEINInterproscan
PTHR31424PROTEIN CBG23806Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000723Biological Processtelomere maintenanceInterproscan
GO:0000783Cellular Componentnuclear telomere cap complexInterproscan
GO:0010521Molecular Functiontelomerase inhibitor activityInterproscan
GO:0016233Biological Processtelomere cappingInterproscan
GO:0032210Biological Processregulation of telomere maintenance via telomeraseInterproscan
GO:0043047Molecular Functionsingle-stranded telomeric DNA bindingInterproscan
GO:0051974Biological Processobsolete negative regulation of telomerase activityInterproscan
GO:0098505Molecular FunctionG-rich strand telomeric DNA bindingInterproscan
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0009451Biological ProcessRNA modificationInterproscan
GO:0009982Molecular Functionpseudouridine synthase activityInterproscan
GO:0031119Biological ProcesstRNA pseudouridine synthesisInterproscan
GO:0005891Cellular Componentvoltage-gated calcium channel complexInterproscan
GO:0008331Molecular Functionhigh voltage-gated calcium channel activityInterproscan
GO:0098703Biological Processcalcium ion import across plasma membraneInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006810Biological ProcesstransportInterproscan
GO:0010972Biological Processnegative regulation of G2/M transition of mitotic cell cycleInterproscan
GO:0030336Biological Processnegative regulation of cell migrationInterproscan
GO:0006486Biological Processprotein glycosylationInterproscan
GO:0008417Molecular Functionfucosyltransferase activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0036065Biological ProcessfucosylationInterproscan
GO:0046920Molecular Functionalpha-(1->3)-fucosyltransferase activityInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06173truA, PUS1; tRNA pseudouridine38-40 synthaseEC:5.4.99.12
Transfer RNA biogenesisko03016deepkoala

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