Gene detail

Detailed information of g2001.t1 in Acropora digitifera

Genomic Location: chr1Alt:33318056...33330399
NR annotation: XP_029186223.2, transmembrane protein 145-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U239	Transmembrane protein 145 OS=Xenopus laevis OX=8355 GN=tmem145 PE=2 SV=1
Q8C4U2	Transmembrane protein 145 OS=Mus musculus OX=10090 GN=Tmem145 PE=1 SV=1
Q8NBT3	Transmembrane protein 145 OS=Homo sapiens OX=9606 GN=TMEM145 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10192 all species →	GpcrRhopsn4	Rhodopsin-like GPCR transmembrane domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047831 all species →	Family	GPR180/TMEM145	Interproscan
IPR019336 all species →	Domain	GPR180/TMEM145, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23252 all species →	INTIMAL THICKNESS RECEPTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0019236 all species →	Biological Process	response to pheromone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g2001.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2001.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

175.0Max TPM

127.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	127.65	175.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	175.05
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	167.11
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	161.12
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	159.45
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	158.48
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	152.53
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	151.78
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	150.44
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	149.62
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	148.81
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	142.63
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	139.61
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	135.16
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	132.74
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	132.40
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	130.50
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	129.99
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	127.72
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	125.51
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	122.93
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	121.30
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	120.09
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	117.29
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	117.01
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	116.51
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	114.67
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	114.36
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	112.98
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	111.32
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	111.13
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	111.02
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	110.45
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	107.45
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	106.53
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	105.55
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	99.01
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	98.95
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	98.06
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	91.21

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.