Gene detail

Detailed information of g2004.t1 in Acropora digitifera

Genomic Location: chr1Alt:33360847...33363835
NR annotation: XP_015769050.1, PREDICTED: phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1-like isoform X1 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86BN8	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 OS=Drosophila melanogaster OX=7227 GN=PTPMT1 PE=2 SV=1
Q8WUK0	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 OS=Homo sapiens OX=9606 GN=PTPMT1 PE=1 SV=1
Q66GT5	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 OS=Mus musculus OX=10090 GN=Ptpmt1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00782 all species →	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR020422 all species →	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR000340 all species →	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR003595 all species →	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR042165 all species →	Family	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1	Interproscan
IPR044596 all species →	Family	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46712 all species →	PHOSPHATIDYLGLYCEROPHOSPHATASE AND PROTEIN-TYROSINE PHOSPHATASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0004439 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	Interproscan
GO:0004721 all species →	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0008962 all species →	Molecular Function	phosphatidylglycerophosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14165	K14165; atypical dual specificity phosphatase	EC:3.1.3.16 EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2004.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

37.5Max TPM

22.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	22.18	37.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	37.54
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	35.97
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	31.65
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	29.40
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	29.24
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	28.63
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	27.28
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	26.45
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	25.97
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	25.87
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	25.10
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	24.88
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	24.01
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	23.73
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	22.69
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	22.62
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	22.08
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	21.94
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	21.88
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	21.53
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	21.47
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	20.64
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	20.51
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	19.54
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	19.04
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	18.75
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	18.67
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	18.55
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	17.99
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	17.95
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	17.83
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	17.27
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	16.56
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	16.44
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	16.23
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	16.09
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	16.00
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	14.10
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	12.91

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.