Gene detail

Detailed information of g2008.t1 in Acropora digitifera

Genomic Location: chr1Alt:33378727...33400765
NR annotation: XP_029186167.2, rho GTPase-activating protein 32-like [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2008.t1

ATGACGACGTGGTTTGCCTCGGAGAAATCCCCAACAGGGACACATTTCGTCTTGACCGCCATTGATAACGATTCAACCATCTCTCAAACGCAATGTGATGCTAATAATAGGAATTCAAGGCCAACAAGACTTCCTTTGGACAGCAGTGGAACCACATGTAAGAGTGTCGGCTTTGAAAAAAGTTCTCCAATGGCAAAAAGGCTTGATCATTTCTATGGGGATGTGAATGGGTACAGAAGCTTTAAGAAAGTTAACAGACGTTCCAGTGGAAATTTACGTTTTCCAAGAGTAGAAGACATGCCTCATTTTCACTATGATTTTGTCGATCTCGGCGAAAAGGTCAAGTTTTGTCTCTATAAAGGCAATGGTGTTGAAAAAAGATACACTAATGGAACAGATGAAGATGGCGTCGTCTTGGTGAATGTGATTTGTCGTGGGAAATCCTGGGTATTAACACGTACCATCGATAACTTTCGACTACTCGATCGGGAACTTCACCGGTGCCTTTTTGACAGATTCCACAGCAAACTCAAATCATTAGCTCGCCTGCAAGATACGGAGCAATTTATCAAAAGTCATGAATGCCGTAAGATACTGCAAGATTACTTGGTTCGCCTCTCTCAGTTGGCTGACGATGCTATGAACTGTAGTGCTGTCCTGAACTGGTTTGAGCTTGATAACCATGGAAACCACATGTTAGTGACAGACGAATCACCAATCAACGTACCAGGAATAGCAGCAGCTCACGTGATTAAACGATACACTGCACAAGCCGTGGATGAAATTTCTTTAGAGGTCGGCAGTATTATTTCTGTGATCGATATGCCTCCAGTAGATGAAAGCTTATGGTGGAGGGGAAAGCACGGTTTCGAGGTTGGGTTTTTTCCGAGTCAATGCGTGGAAGTCATAGGTGACAAGACGGATGGTAAGACGCCCCTTCCTTCTACTACGCCCTCTCCACACATGACGCCAGTTGCCAAGAAGCGGGGAAAGATTGTTAGCTTTTTGAGATTGTTCTTGTCTTCTCGTCCTTCCAAGGCACGGTTGTTGCAAAGTGGCATTCTAAAAGAACGGACTTTTGGATGCGATTTGGGCGAACATTTGGCGAAAAATAATAACCAAGATGTTCCATCAGTGTTAAAGAAGTGCGCCGAAGTTATCGAGTCCCATGGTATTGTCGATGGCATTTACCGATTGTCTGGCATGTCATCCAATATTCAAAAGCTCAGGTTGGCTTTTGACGGGGAAGAGCCTCCAGATCTTCTTAAAGAGTGCTATCTCCGAGACATTCACTGCATTAGCTCGTTGCTCAAGATGTATTTCAGAGAACTTCCGAATCCTCTGCTAACATACCATCTTTATGACAAGTTTGTGGCTGCTATTAAGATCCCTGAAGAATCAGAACGCCAAATTGCCGTGCATCACGTGGTGCAGCAACTTCCGCCCCCTCACTACAGGACCCTGGAGTACCTCTTACGTCACTTGTCCCGTGTGGCCTCGTTTTCGTCTCAAACCGGCATGCACGCAAAGAACCTTGCCATAGTATGGTCCCCAAACCTCCTGCGGCCAATGGCATTGGACAGTGGCGGCACCGCGCTATTGGAGGTCAGCGTTCAAGCCATCATTATTGAATACCTCATAAGGAATGTTCACGTGTTTTTCGACCAGCACGCGGCTGCAGCAGTGATTGTGGCGAACCCTCGATTCTCGACTGGCTCTCGACTTTCGCAGCAAAGAGTCGAAACTGAGTTAGATATCGCTGGCATCCCTTCGATTGGTCCGAGAATTGCTTCACTTTCTATTTCTCCGCCAACCAAACTTATCACCTTGGAGGAAGCCCGAGCCCGAGCTCAGAGCACTCCAGCGAAATCAAAAGCGCATTATGGCGGCTCGAAGCCAGCGGACGCACCACAAACGTCCCAGTCTCCCGTCTGTCGGACTTCAGTGGACCTTCCGGTCAGGAGCAAAACTGTGGATGGGTCTGTTAATGGACGAAAGTGGAAGGGATTTTTTAACAAAGGAAAGAGTTTCGATGTGGCAGAGCCAGTGACGAAAAGTAAACAAACAGATCCAGAAAATAACTTAAATGTCGGGCGTGATACGAAGAAAGACCTCGTGGAAGGTGTTCGACACGTGCGGAGTGAGGAGAATCTCAGTGACTCAACAATCGAGAAGCCACCGCTGCCTGTGAAGACCAGGCATGTACACGCAGAAGTAAAACAATGCGAGGCTGTTAATGAGATCAAAACCACCTTACATCAGCCTGTCACTATATCATTCACCCATAAACCAGTGCGCGAACGCATAGCATCGTTTGAAAGTAAGCGACATTCAGCGATGCCTTCCTTCCAACGTGTACCATCCGATCAGAATATGTTTTATACTAAGGGTTCATATCCTCCCAGGCCCAGTCATCGAAGGGCCTCGACTGGTGGCGAGGAAATTCACATGAATGTACAAAGGAGGGAACGAACGAACGCTGATCATCGACCCGTGTCTGTGTACGACAATCGACCGGTATCGATTTACGATAACGAGCCAACGAATCCGTGTCGGTATTCATCGCCTGTGTTCTCCGAAAAATACCGTGTGATTCCCGAAGACAAGTTACCGTACCGATACTCTACCCCAGGAGGTATTGCTACCCCTCCCTTGAAAAGAACTTCAAAAGGAACAAAGTTGTCCGATCAAAAGATTGCTGTGACGGGAGCGAGATTGGCGCATACACCTTTGGTGCAGTGCGCCAATAGCAGTAGGCCAATGCACTGA

Transcript

chr1Alt.g2008.t1

ATGGAATAAGAACAAAGGGAAATCCACAAATTTATTCATACAAAGATACCAAGGCTCTAAAAACGCGAGCTGTACAAAATGACGACGTGGTTTGCCTCGGAGAAATCCCCAACAGGGACACATTTCGTCTTGACCGCCATTGATAACGATTCAACCATCTCTCAAACGCAATGTGATGCTAATAATAGGAATTCAAGGCCAACAAGACTTCCTTTGGACAGCAGTGGAACCACATGTAAGAGTGTCGGCTTTGAAAAAAGTTCTCCAATGGCAAAAAGGCTTGATCATTTCTATGGGGATGTGAATGGGTACAGAAGCTTTAAGAAAGTTAACAGACGTTCCAGTGGAAATTTACGTTTTCCAAGAGTAGAAGACATGCCTCATTTTCACTATGATTTTGTCGATCTCGGCGAAAAGGTCAAGTTTTGTCTCTATAAAGGCAATGGTGTTGAAAAAAGATACACTAATGGAACAGATGAAGATGGCGTCGTCTTGGTGAATGTGATTTGTCGTGGGAAATCCTGGGTATTAACACGTACCATCGATAACTTTCGACTACTCGATCGGGAACTTCACCGGTGCCTTTTTGACAGATTCCACAGCAAACTCAAATCATTAGCTCGCCTGCAAGATACGGAGCAATTTATCAAAAGTCATGAATGCCGTAAGATACTGCAAGATTACTTGGTTCGCCTCTCTCAGTTGGCTGACGATGCTATGAACTGTAGTGCTGTCCTGAACTGGTTTGAGCTTGATAACCATGGAAACCACATGTTAGTGACAGACGAATCACCAATCAACGTACCAGGAATAGCAGCAGCTCACGTGATTAAACGATACACTGCACAAGCCGTGGATGAAATTTCTTTAGAGGTCGGCAGTATTATTTCTGTGATCGATATGCCTCCAGTAGATGAAAGCTTATGGTGGAGGGGAAAGCACGGTTTCGAGGTTGGGTTTTTTCCGAGTCAATGCGTGGAAGTCATAGGTGACAAGACGGATGGTAAGACGCCCCTTCCTTCTACTACGCCCTCTCCACACATGACGCCAGTTGCCAAGAAGCGGGGAAAGATTGTTAGCTTTTTGAGATTGTTCTTGTCTTCTCGTCCTTCCAAGGCACGGTTGTTGCAAAGTGGCATTCTAAAAGAACGGACTTTTGGATGCGATTTGGGCGAACATTTGGCGAAAAATAATAACCAAGATGTTCCATCAGTGTTAAAGAAGTGCGCCGAAGTTATCGAGTCCCATGGTATTGTCGATGGCATTTACCGATTGTCTGGCATGTCATCCAATATTCAAAAGCTCAGGTTGGCTTTTGACGGGGAAGAGCCTCCAGATCTTCTTAAAGAGTGCTATCTCCGAGACATTCACTGCATTAGCTCGTTGCTCAAGATGTATTTCAGAGAACTTCCGAATCCTCTGCTAACATACCATCTTTATGACAAGTTTGTGGCTGCTATTAAGATCCCTGAAGAATCAGAACGCCAAATTGCCGTGCATCACGTGGTGCAGCAACTTCCGCCCCCTCACTACAGGACCCTGGAGTACCTCTTACGTCACTTGTCCCGTGTGGCCTCGTTTTCGTCTCAAACCGGCATGCACGCAAAGAACCTTGCCATAGTATGGTCCCCAAACCTCCTGCGGCCAATGGCATTGGACAGTGGCGGCACCGCGCTATTGGAGGTCAGCGTTCAAGCCATCATTATTGAATACCTCATAAGGAATGTTCACGTGTTTTTCGACCAGCACGCGGCTGCAGCAGTGATTGTGGCGAACCCTCGATTCTCGACTGGCTCTCGACTTTCGCAGCAAAGAGTCGAAACTGAGTTAGATATCGCTGGCATCCCTTCGATTGGTCCGAGAATTGCTTCACTTTCTATTTCTCCGCCAACCAAACTTATCACCTTGGAGGAAGCCCGAGCCCGAGCTCAGAGCACTCCAGCGAAATCAAAAGCGCATTATGGCGGCTCGAAGCCAGCGGACGCACCACAAACGTCCCAGTCTCCCGTCTGTCGGACTTCAGTGGACCTTCCGGTCAGGAGCAAAACTGTGGATGGGTCTGTTAATGGACGAAAGTGGAAGGGATTTTTTAACAAAGGAAAGAGTTTCGATGTGGCAGAGCCAGTGACGAAAAGTAAACAAACAGATCCAGAAAATAACTTAAATGTCGGGCGTGATACGAAGAAAGACCTCGTGGAAGGTGTTCGACACGTGCGGAGTGAGGAGAATCTCAGTGACTCAACAATCGAGAAGCCACCGCTGCCTGTGAAGACCAGGCATGTACACGCAGAAGTAAAACAATGCGAGGCTGTTAATGAGATCAAAACCACCTTACATCAGCCTGTCACTATATCATTCACCCATAAACCAGTGCGCGAACGCATAGCATCGTTTGAAAGTAAGCGACATTCAGCGATGCCTTCCTTCCAACGTGTACCATCCGATCAGAATATGTTTTATACTAAGGGTTCATATCCTCCCAGGCCCAGTCATCGAAGGGCCTCGACTGGTGGCGAGGAAATTCACATGAATGTACAAAGGAGGGAACGAACGAACGCTGATCATCGACCCGTGTCTGTGTACGACAATCGACCGGTATCGATTTACGATAACGAGCCAACGAATCCGTGTCGGTATTCATCGCCTGTGTTCTCCGAAAAATACCGTGTGATTCCCGAAGACAAGTTACCGTACCGATACTCTACCCCAGGAGGTATTGCTACCCCTCCCTTGAAAAGAACTTCAAAAGGAACAAAGTTGTCCGATCAAAAGATTGCTGTGACGGGAGCGAGATTGGCGCATACACCTTTGGTGCAGTGCGCCAATAGCAGTAGGCCAATGCACTGATTGTGTCACCGTGAAGTCAATTGACTATTGTGCAAAGTCTTTAAACATGGCATGTTTTAAGACTTCGCACAATATTCAAGAAGAAAGTTTTAACAGAAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GPD0	Rho GTPase-activating protein 32 OS=Xenopus laevis OX=8355 GN=arhgap32 PE=2 SV=1
Q80YF9	Rho GTPase-activating protein 33 OS=Mus musculus OX=10090 GN=Arhgap33 PE=1 SV=1
O14559	Rho GTPase-activating protein 33 OS=Homo sapiens OX=9606 GN=ARHGAP33 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR051576 all species →	Family	PX Domain-Containing Rho GAP	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15729 all species →	CDC42 GTPASE-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20647	ARHGAP32; Rho GTPase-activating protein 32	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.