Gene detail

Detailed information of g20288.t1 in Montipora capitata

Genomic Location: Sc0001156:38323...60367
NR annotation: XP_022810535.1, protein argonaute-2-like, partial [Stylophora pistillata]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g20288.t1

atgccaaggaagaaatccaagggaagaggtggtcgaggcagaggaaatttaaacggacaagaagaattacctcgaccaggaagaagcgaaaatggcgcatcggccgaagctcccgatcgcgaagaaagattaaccttgagcgacgagaaactcgaaggagggcgcgaagaaaaagctgagccaagccagggaagatcttcggctgaagacaagcgatgtgcggggtccagtcgtccgtcagtaacccaggagaagtttgatagagaagcgaaggcagaggagaagaagccaagttccatcgatgaaaggccaagtcccggtggaactgcgcctggggcaaaagcatcgccttctaaaggagctggaaaagcagagaaaagtgaactagaaggagtatctcagggaaagtcactcccttcgtcttctgcctccaaagggtccagtcgtccgtcagtaacccaggagaagtttgatagagaagcgaagtcagtggaaaagaagacatgttccaccgatgaaaggccaggtaccagtgaaactgcacctagggcaaaagcatcaccttcctctaaaggagctggaaaagaagagaaaagtaaacaagaaggagtatctcagggaaaatcactcccttcgtcttctgcttccaaagaagggacacggtcgccaggccgtggtgcttctgcagttgatccagaggtcaggcaagatgtttgtaaattgacagaaacacttggtagcagctttactgttcaagaccatgtagctcgccaaagtagtggcaatggaggtctgcgacccccaaagaggcccagccatggtactgttggacggcctatcaagttaagagccaactttttccagatgaatgtctcttcaaagctgacctatttataccactacgatgttgagattactcccaacaaatgtccaaaggttgtaaaaagagatgttgtgaaccaaatcatacagaaatacaagaaagagactttccaaggtcatgaaccagcatttgatggcgaaaagaacttgataagttccaaagaacttccatctccagtggaactcagtgttacattggctggtgaagatggaggaaaggacagaacatttaaggtcaagatccagtttgcagcatcagtaagtcttgtcgcattgaaggcctttttggatggcaagcaaaatggaaaaatggctcaagatgctgtacaggcattggacattgtcttgaggcaaatcccatctatccgctttacacctattggacgatcgtttttcccctttgatggccgtggcagacccataggggagggttgtgaggtgcagtttgggttttaccagagtgtccgcccctcagaatggaaggccatgctggtgaacattgacgtttctgcaaaaggattttataaaagccagccagtaattgacttcttttgtgaaatcttggacattaatcatcaatatcttggggacagaagacttcaaattgacagagagaaattcaagaaggcaataagtggtgttcgtatagaaacaacgcatgtccaatcaatgaagagaaagtacactgtttggggactctcaagtcaatctgctgatcgattgcagtttgacatagaagatgaagcaggccgcagaagcaagacaactgtggcccagtacttcaatgacaaatacagaccgttaaatggtggtggtggtggtggtggtagtggtagtggtagtgatagtgatggagatgttattgatgaggatggcgacgatgacgagaacaaaggtgacgatgattatgaaacaccaagttgtggttttcttaacccatttggttttcacagctcgagatttattgtgtcagtgcaagaaatgataaaaacaagtggaaaatacttgaaggaagaattccagaccactgtgaaccctgaaatggttgctgtagaaggacgagtcctcccgcctcctaaacttaagctcggaccccaagatcaaggattggtcccacgtgagggctcttgggacatgcgcagtcagaaactatttgaaggcgcccgtattgatacatgggcgttggcctgcttcgcaccaatgcaacgttgtaatcaagatacactgtggaggttttgtgaccaaatgtccagtgtgtcaactcgagagggaatgaggatgacgccacagccaaccgttgtacgatatgcaagagatgcaagagacgtaagttgtgcttccttgtcagtggtagtggtggactgcctctgctaa

Transcript

g20288.t1

ATGCCAAGGAAGAAATCCAAGGGAAGAGGTGGTCGAGGCAGAGGAAATTTAAACGGACAAGAAGAATTACCTCGACCAGGAAGAAGCGAAAATGGCGCATCGGCCGAAGCTCCCGATCGCGAAGAAAGATTAACCTTGAGCGACGAGAAACTCGAAGGAGGGCGCGAAGAAAAAGCTGAGCCAAGCCAGGGAAGATCTTCGGCTGAAGACAAGCGATGTGCGGGGTCCAGTCGTCCGTCAGTAACCCAGGAGAAGTTTGATAGAGAAGCGAAGGCAGAGGAGAAGAAGCCAAGTTCCATCGATGAAAGGCCAAGTCCCGGTGGAACTGCGCCTGGGGCAAAAGCATCGCCTTCTAAAGGAGCTGGAAAAGCAGAGAAAAGTGAACTAGAAGGAGTATCTCAGGGAAAGTCACTCCCTTCGTCTTCTGCCTCCAAAGGGTCCAGTCGTCCGTCAGTAACCCAGGAGAAGTTTGATAGAGAAGCGAAGTCAGTGGAAAAGAAGACATGTTCCACCGATGAAAGGCCAGGTACCAGTGAAACTGCACCTAGGGCAAAAGCATCACCTTCCTCTAAAGGAGCtggaaaagaagagaaaagtaaacaagaaGGAGTATCTCAGGGAAAATCACTCCCTTCGTCTTCTGCTTCCAAAGAAGGGACACGGTCGCCAGGCCGTGGTGCTTCTGCAGTTGATCCAGAGGTCAGGCAAGATGTTTGTAAATTGACAGAAACACTTGGTAGCAGCTTTACTGTTCAAGACCATGTAGCTCGCCAAAGTAGTGGCAATGGAGGTCTGCGACCCCCAAAGAGGCCCAGCCATGGTACTGTTGGACGGCCTATCAAGTTAAGAGCCAACTTTTTCCAGATGAATGTCTCTTCAAAGCTGACCTATTTATACCACTACGATGTTGAGATTACTCCCAACAAATGTCCAAAGGTTGTAAAAAGAGATGTTGTGAACCAAATCATACAGAAATACAAGAAAGAGACTTTCCAAGGTCATGAACCAGCATTTGATGGCGAAAAGAACTTGATAAGTTCCAAAGAACTTCCATCTCCAGTGGAACTCAGTGTTACATTGGCTGGTGAAGATGGAGGAAAGGACAGAACATTTAAGGTCAAGATCCAGTTTGCAGCATCAGTAAGTCTTGTCGCATTGAAGGCCTTTTTGGATGGCAAGCAAAATGGAAAAATGGCTCAAGATGCTGTACAGGCATTGGACATTGTCTTGAGGCAAATCCCATCTATCCGCTTTACACCTATTGGACGATCGTTTTTCCCCTTTGATGGCCGTGGCAGACCCATAGGGGAGGGTTGTGAGGTGCAGTTTGGGTTTTACCAGAGTGTCCGCCCCTCAGAATGGAAGGCCATGCTGGTGAACATTGACGtttCTGCAAAAGGATTTTATAAAAGCCAGCCAGTAATTGACTTCTTTTGTGAAATCTTGGACATTAATCATCAATATCTTGGGGACAGAAGACTTCAAATTGACAGAGAGAAATTCAAGAAGGCAATAAGTGGTGTTCGTATAGAAACAACGCATGTCCAATCAATGAAGAGAAAGTACACTGTTTGGGGACTCTCAAGTCAATCTGCTGATCGATTGCAGTTTGACATAGAAGATGAAGCAGGCCGCAGAAGCAAGACAACTGTGGCCCAGTACTTCAATGACAAATACAGACCGTTAAAtggtggtggtggtggtggtggtagtggtagtggtagtgatAGTGATGGAGATGTTATTGATGAGGATGGCGACGATGACGAGAACAAAGGTGACGATGATTATGAAACACCAAGTTGTGGTTTTCTTAACCCATTTGGTTTTCACAGCTCGAGATTTATTGTGTCAGTGCAAGAAATGATAAAAACAAGTGGAAAATACTTGAAGGAAGAATTCCAGACCACTGTGAACCCTGAAATGGTTGCTGTAGAAGGACGAGTCCTCCCGCCTCCTAAACTTAAGCTCGGACCCCAAGATCAAGGATTGGTCCCACGTGAGGGCTCTTGGGACATGCGCAGTCAGAAACTATTTGAAGGCGCCCGTATTGATACATGGGCGTTGGCCTGCTTCGCACCAATGCAACGTTGTAATCAAGATACACTGTGGAGGTTTTGTGACCAAATGTCCAGTGTGTCAACTCGAGAGGGAATGAGGATGACGCCACAGCCAACCGTTGTACGATATGCAAGAGATGCAAGAGACGTAAGTTGTGCTTCCTTGTCAGTGGTAGTGGTGGACTGCCTCTGCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HCK5	Protein argonaute-4 OS=Homo sapiens OX=9606 GN=AGO4 PE=1 SV=2
Q8CJF8	Protein argonaute-4 OS=Mus musculus OX=10090 GN=Ago4 PE=2 SV=2
Q8CJG0	Protein argonaute-2 OS=Mus musculus OX=10090 GN=Ago2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000825 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16486 all species →	ArgoN	N-terminal domain of argonaute	Domain	Interproscan
PF02170 all species →	PAZ	PAZ domain	Domain	Interproscan
PF16487 all species →	ArgoMid	Mid domain of argonaute	Domain	Interproscan
PF08699 all species →	ArgoL1	Argonaute linker 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003100 all species →	Domain	PAZ domain	Interproscan
IPR032474 all species →	Domain	Protein argonaute, N-terminal	Interproscan
IPR014811 all species →	Domain	Argonaute, linker 1 domain	Interproscan
IPR036085 all species →	Homologous_superfamily	PAZ domain superfamily	Interproscan
IPR032473 all species →	Domain	Protein argonaute, Mid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0016246 all species →	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0035198 all species →	Molecular Function	miRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g20288.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.