Gene detail

Detailed information of g20332.t1 in Acropora digitifera

Genomic Location: chr9Alt:21813494...21827567
NR annotation: XP_044168803.1, lethal(3)malignant brain tumor-like protein 3 [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g20332.t1

ATGAATGGACTGCTGCAGGAAGGTGGGGCCCTTGTTACAAGTACAATGGAGGAAAGCTATGAGCCGCAATCAAAGAGACAGAAAGCAGGAAGTGATGGAGATGAACATCTAAATTCTCAAAGTCAGATTCTATCTGACAACATCGAGTTGGCTCTTGGTGAAATTACTACTGGGAATAACAGAGAAGCTGAATCTTCAATGATGAATCACACTAATCCAAGCTCCAGTAATGACTTGAAATTGAGTGACAAGAGTGTAGCTGCAAACCCAAGTGAGGCAGTAATTGCTATGGAGACCACCGATACAGATGCAAAAACAAACAAACTGAAACAAACTAATAATAACATTGAAGACAGCAAAGATACTTCTGTAGATTCAACAGAGCCAACGGGTTTGAAGATCAAGAAGGAAAAGAAACCCCAATTTGAAGATGATGACCCTTTTGCGGCTTTGGATTGGAATAATGGAATTGCCACTCTGCCAGGGAGCAACTTGAAATTCAAGTTGACAGAGTTTGGTACACTGGAGATAATAAGCACTGTGGAAACAGAGAAGGGTGAGATAACCTGGAGCACCCCAACTGAACATGGATGCAAATCTGCAAATGATGACACAAATAGCATTGTAAAGGAGTCACCAGGCATTGCTCTCACTAAGAAGGATGAAGGCAGAAGGAACAAGGGCAGAGAGTTTGTGCGCAAAGTCAAAACTTCAAGCGGCAAAATTGTGAAAAAGAAAAAGAAGGGAAAAGGGAAGAAAATTTCAATGGCAGGAAAGACGGCTGGGTTGATAAGCAGTTCTATGCCTCCACCAGTCCAGGATGGGCCTTTGATGGGCAAATTTAAACTCAAAGGGAAAGGAGAAAAATATAAAGTTAAAGCAGCCAAACAGTTCATTGCATTAGAACCAGCTGATCTAATGAATGGTGAAGAAGTTCCATATGACTCCACCAAGCCATTTGTTTGGTCAGAATACCTCGCGGCTTGTGGGGCGAAAGCAGTTCCTAACATTGTGTTCAAACAGGAGAATCCATCTTTGGACGTATTTCCCAAGCCAAACCACGCGTTTAGAAAGGATTACAAACTAGAATGCATTGACCCAAAGCACCCCTCCTACATCTGCGTGTGCACTATTGTAAAGGTGAAAGGAGCGCGGCTTAGGATGCACTTTGATGGCTGGTCTGAGAGCTATGATTTCTGGACAAACTGGGATTCGCCTTTTATCTTTCCAATGGGCTGGTGCGAGAAGAACGGACAAGTCCTACATCCCCCGAGAAGTTTCAACAAACAAGAATTTAACTGGGAAAAGTATTTGAAGAAATGCGGCGCAAAGGCGGTTCCAGAACATTTATTCAAACCGGTTCATGTCACAGAGCACGGATTTAAAGTCGGCATGAAACTTGAAGCAGTGGATCGTAAAAACCCCGATCTAATATGTGTTGCCACGGTGACAAATGTGATTGGCAACCATTTCCTTGTTCACTTTGATGAATGGGATGATTCCTATGACTACTGGTGTCAGGACGATTGTCCTTATATTCACCCAGTGGGGTGGTGCGCAGAAAATGGAAAGAAACTGAACCCGCCAAACGATGACGAGGTGTATACTTTTCAATGGGAGCAGTATCTGCGGGACACTGGAACCGTAGCAGCATCTCCTGATTTGTTTAAGAAGCGCCCCATGCCAAGTTTCAAGGCTGGAGAAAAATTAGAAGCTGTGGACAAGAGAAACCCCTCCCTTGTGCGTGCAGCCCGTGTCGCGAGCGTTGAGGAGTACAGAGTGAAGATACACTTTGATGGATGGGATGATATCTATGACGATTGGTTCGATGCAGACTCAAATGATTTGCACCCTGTGGGGTGGTGTGAGAAAACAGGACATCCTTTGGAGACCCCACTCACAACACGTGAGAAAATCTCCAGCGCGGCTTGTCCAACTCCTGGCTGTAAAGGAATCGGTCACGTGAAGGGTGCTAAGTATTCCACACATCACAGTACATTTGGCTGTCCTTACTCGCTACAAAACCTGAACAAAGACTCATGTCTTGTGGATCGACTCTCCAACAACTCCATGACTGAGGAATCTGATTGGTCCTACGCTTCCAAACAAAAGGCTACTGGGGGCAAGGAAGTAAAACCTGAAATTTTGCCGAGTCAAACAGTGGAGGGCGTGTGTCCCACCCCTGGATGTGATGGTTTGGGTCATGTGACGGGGCATTGGAAAACTCATTACACTTTGTCAGGTTGTCCAAACAACGAAGCAAACCAAGCCAAGGTGTTTTCAAAACACTCTTCCAAGTCACCTGTCGCAAAGAAAACCCCACACCTCTCTCCGTTATCCTCTAGTCCTCCCTCCGTCAGTGGATCGCTGAAGAGCCCTGTTAGTGGCAGTATTATATCCACGAGGAGCTCAGCTAGGAAAGGATTTTTCAAGGAAGACAGGCATTCTGGAGGTCCAAACAAATACGCAGACAAGGCAGTTCAACATGTCACACCCTTTGCATTTCCTTGGCCGCTGGGAAGTCAGTTTTCAATGATGGGTCTTAGTGAACTCAAAGCCGCCATTAATTCAGAAAACGATGGCGTTGCTTCCAGCGAGCGGCAGCGGATCATGAAATGGACCATTGATGACGTCATGAGTCACGTGAAATCCTTAGGATGCGTGGATCAGGCGAAAGTGTTCGGGGAAGAGCTAATTGATGGCGAAGCGTTTCTCCTGCTGACACAGAATGACATTGTTAACTTACTCAAAATCAAGCTTGGACCAGCCCTTAAGATATTTCACACCATTCCAAAGCACTGA

Transcript

chr9Alt.g20332.t1

ATTCTACTTACGTTTTCAAACGAATTTAGCGGTCTTTTTGGGGGTTTTAGGTGATTTTCAAAAAAGCCATGAATGGACTGCTGCAGGAAGGTGGGGCCCTTGTTACAAGTACAATGGAGGAAAGCTATGAGCCGCAATCAAAGAGACAGAAAGCAGGAAGTGATGGAGATGAACATCTAAATTCTCAAAGTCAGATTCTATCTGACAACATCGAGTTGGCTCTTGGTGAAATTACTACTGGGAATAACAGAGAAGCTGAATCTTCAATGATGAATCACACTAATCCAAGCTCCAGTAATGACTTGAAATTGAGTGACAAGAGTGTAGCTGCAAACCCAAGTGAGGCAGTAATTGCTATGGAGACCACCGATACAGATGCAAAAACAAACAAACTGAAACAAACTAATAATAACATTGAAGACAGCAAAGATACTTCTGTAGATTCAACAGAGCCAACGGGTTTGAAGATCAAGAAGGAAAAGAAACCCCAATTTGAAGATGATGACCCTTTTGCGGCTTTGGATTGGAATAATGGAATTGCCACTCTGCCAGGGAGCAACTTGAAATTCAAGTTGACAGAGTTTGGTACACTGGAGATAATAAGCACTGTGGAAACAGAGAAGGGTGAGATAACCTGGAGCACCCCAACTGAACATGGATGCAAATCTGCAAATGATGACACAAATAGCATTGTAAAGGAGTCACCAGGCATTGCTCTCACTAAGAAGGATGAAGGCAGAAGGAACAAGGGCAGAGAGTTTGTGCGCAAAGTCAAAACTTCAAGCGGCAAAATTGTGAAAAAGAAAAAGAAGGGAAAAGGGAAGAAAATTTCAATGGCAGGAAAGACGGCTGGGTTGATAAGCAGTTCTATGCCTCCACCAGTCCAGGATGGGCCTTTGATGGGCAAATTTAAACTCAAAGGGAAAGGAGAAAAATATAAAGTTAAAGCAGCCAAACAGTTCATTGCATTAGAACCAGCTGATCTAATGAATGGTGAAGAAGTTCCATATGACTCCACCAAGCCATTTGTTTGGTCAGAATACCTCGCGGCTTGTGGGGCGAAAGCAGTTCCTAACATTGTGTTCAAACAGGAGAATCCATCTTTGGACGTATTTCCCAAGCCAAACCACGCGTTTAGAAAGGATTACAAACTAGAATGCATTGACCCAAAGCACCCCTCCTACATCTGCGTGTGCACTATTGTAAAGGTGAAAGGAGCGCGGCTTAGGATGCACTTTGATGGCTGGTCTGAGAGCTATGATTTCTGGACAAACTGGGATTCGCCTTTTATCTTTCCAATGGGCTGGTGCGAGAAGAACGGACAAGTCCTACATCCCCCGAGAAGTTTCAACAAACAAGAATTTAACTGGGAAAAGTATTTGAAGAAATGCGGCGCAAAGGCGGTTCCAGAACATTTATTCAAACCGGTTCATGTCACAGAGCACGGATTTAAAGTCGGCATGAAACTTGAAGCAGTGGATCGTAAAAACCCCGATCTAATATGTGTTGCCACGGTGACAAATGTGATTGGCAACCATTTCCTTGTTCACTTTGATGAATGGGATGATTCCTATGACTACTGGTGTCAGGACGATTGTCCTTATATTCACCCAGTGGGGTGGTGCGCAGAAAATGGAAAGAAACTGAACCCGCCAAACGATGACGAGGTGTATACTTTTCAATGGGAGCAGTATCTGCGGGACACTGGAACCGTAGCAGCATCTCCTGATTTGTTTAAGAAGCGCCCCATGCCAAGTTTCAAGGCTGGAGAAAAATTAGAAGCTGTGGACAAGAGAAACCCCTCCCTTGTGCGTGCAGCCCGTGTCGCGAGCGTTGAGGAGTACAGAGTGAAGATACACTTTGATGGATGGGATGATATCTATGACGATTGGTTCGATGCAGACTCAAATGATTTGCACCCTGTGGGGTGGTGTGAGAAAACAGGACATCCTTTGGAGACCCCACTCACAACACGTGAGAAAATCTCCAGCGCGGCTTGTCCAACTCCTGGCTGTAAAGGAATCGGTCACGTGAAGGGTGCTAAGTATTCCACACATCACAGTACATTTGGCTGTCCTTACTCGCTACAAAACCTGAACAAAGACTCATGTCTTGTGGATCGACTCTCCAACAACTCCATGACTGAGGAATCTGATTGGTCCTACGCTTCCAAACAAAAGGCTACTGGGGGCAAGGAAGTAAAACCTGAAATTTTGCCGAGTCAAACAGTGGAGGGCGTGTGTCCCACCCCTGGATGTGATGGTTTGGGTCATGTGACGGGGCATTGGAAAACTCATTACACTTTGTCAGGTTGTCCAAACAACGAAGCAAACCAAGCCAAGGTGTTTTCAAAACACTCTTCCAAGTCACCTGTCGCAAAGAAAACCCCACACCTCTCTCCGTTATCCTCTAGTCCTCCCTCCGTCAGTGGATCGCTGAAGAGCCCTGTTAGTGGCAGTATTATATCCACGAGGAGCTCAGCTAGGAAAGGATTTTTCAAGGAAGACAGGCATTCTGGAGGTCCAAACAAATACGCAGACAAGGCAGTTCAACATGTCACACCCTTTGCATTTCCTTGGCCGCTGGGAAGTCAGTTTTCAATGATGGGTCTTAGTGAACTCAAAGCCGCCATTAATTCAGAAAACGATGGCGTTGCTTCCAGCGAGCGGCAGCGGATCATGAAATGGACCATTGATGACGTCATGAGTCACGTGAAATCCTTAGGATGCGTGGATCAGGCGAAAGTGTTCGGGGAAGAGCTAATTGATGGCGAAGCGTTTCTCCTGCTGACACAGAATGACATTGTTAACTTACTCAAAATCAAGCTTGGACCAGCCCTTAAGATATTTCACACCATTCCAAAGCACTGATGCCAGTAACAGGTTTACCACTGTCGAATGGATAAGAATTTCAGTTTGCAAACTTTAACTAATTTTTGGTAATTAGCCAAAAGGTTGGGACGAACAAAGCGAGAATTTGCTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E1C2V1	Lethal(3)malignant brain tumor-like protein 1 OS=Gallus gallus OX=9031 GN=L3MBTL1 PE=3 SV=1
Q96JM7	Lethal(3)malignant brain tumor-like protein 3 OS=Homo sapiens OX=9606 GN=L3MBTL3 PE=1 SV=2
D3ZWK4	Lethal(3)malignant brain tumor-like protein 1 OS=Rattus norvegicus OX=10116 GN=L3mbtl1 PE=3 SV=1

Gene family

Family type	Membership / link
Transcription factor family	zf-C2HC · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01530 all species →	zf-C2HC	Zinc finger, C2HC type	Family	Interproscan
PF02820 all species →	MBT	mbt repeat	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR004092 all species →	Repeat	Mbt repeat	Interproscan
IPR036060 all species →	Homologous_superfamily	Zinc finger, C2H2C-type superfamily	Interproscan
IPR050548 all species →	Family	Polycomb group and chromatin remodeling factors	Interproscan
IPR002515 all species →	Repeat	Zinc finger, C2H2C-type	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12247 all species →	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24387	L3MBTL; lethal(3)malignant brain tumor-like protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.