Gene detail

Detailed information of g2035.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MBU2643482.1, type II secretion system secretin GspD [bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P45779	Secretin GspD OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=epsD PE=1 SV=2
P45778	Secretin ExeD OS=Aeromonas salmonicida OX=645 GN=exeD PE=3 SV=1
P31780	Secretin ExeD OS=Aeromonas hydrophila OX=644 GN=exeD PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013299 (this species only)
Orthogroup (gene family)	OG0048287 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03958 all species →	Secretin_N	Bacterial type II/III secretion system short domain	Domain	Interproscan
PF00263 all species →	Secretin	Bacterial type II and III secretion system protein	Family	Interproscan
PF01272 all species →	GreA_GreB	Transcription elongation factor, GreA/GreB, C-term	Domain	Interproscan
PF21305 all species →	type_II_gspD_N0	GspD-like, N0 domain	Domain	Interproscan
PF03449 all species →	GreA_GreB_N	Transcription elongation factor, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028624 all species →	Family	Transcription elongation factor GreA/GreB	Interproscan
IPR038591 all species →	Homologous_superfamily	NolW-like superfamily	Interproscan
IPR050810 all species →	Family	Bacterial Secretion System Channel Protein	Interproscan
IPR006359 all species →	Family	Transcription elongation factor GreA	Interproscan
IPR013356 all species →	Family	Type II secretion system protein GspD	Interproscan
IPR005644 all species →	Domain	NolW-like	Interproscan
IPR004846 all species →	Domain	Type II/III secretion system, secretin-like domain	Interproscan
IPR036805 all species →	Homologous_superfamily	Transcription elongation factor, GreA/GreB, N-terminal domain superfamily	Interproscan
IPR001437 all species →	Domain	Transcription elongation factor, GreA/GreB, C-terminal	Interproscan
IPR036953 all species →	Homologous_superfamily	Transcription elongation factor GreA/GreB, C-terminal domain superfamily	Interproscan
IPR001775 all species →	Family	GspD/PilQ family	Interproscan
IPR049371 all species →	Domain	GspD-like, N0 domain	Interproscan
IPR022691 all species →	Domain	Transcription elongation factor, GreA/GreB, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30332 all species →	PROBABLE GENERAL SECRETION PATHWAY PROTEIN D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0032784 all species →	Biological Process	regulation of DNA-templated transcription elongation	Interproscan
GO:0070063 all species →	Molecular Function	RNA polymerase binding	Interproscan
GO:0009306 all species →	Biological Process	protein secretion	Interproscan
GO:0015627 all species →	Cellular Component	type II protein secretion system complex	Interproscan
GO:0015628 all species →	Biological Process	protein secretion by the type II secretion system	Interproscan
GO:0019867 all species →	Cellular Component	outer membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02453	gspD; general secretion pathway protein D	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.