Gene detail

Detailed information of g20355.t1 in Acropora digitifera

Genomic Location: chr9Alt:22125203...22140693
NR annotation: XP_044168771.1, ankyrin repeat domain-containing protein 13D-like isoform X2 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr9Alt.g20355.t1

ATTGTGTTAAGAAAGTCCCATGAGAATTTCAAGGTCCTTACCACAAACTTCCCGCGGGTGATAACGCGCGAGTTCACAACTTTATTGGCGACGAATTGAAATCTCGAAGTGGAAGAAAGAAAGAAAAATTAAATGAACCTGGTGACGGTACTTCTGAACGTACTGCACCTCGATGTCTGTCCGGAGTTGGCAAGGCTTACAAAAGGAGGAATCGTCTCCTTTGTACGGAGCGTTGGTTAGAAATAAATACGTCACGAGGCATTGTGTGACTTTACGTGACTACAAAGTACTCCCATGAGAGCGTGACAGAATGTGGTCAGCTGTTTGCACATAAAGTAACAACAACGCAAAATGGCGGCCAGTGGAGGAGGGAAGGACATTTTGGTCGCTTCTCCACCCCGAATTAGCAGAGATGAAATTTTGTCTGACTTCCCATTACATTGGCACGTATGGCACAAAGATGCTGCTTCTCTTGAAGAAGAACTCGCATTGAATAGGCACAATAAAGAAGCGTTAGATCGCCGTGGCCGAACTCCCCTTCATTTAGCGGTTACTCTAGGATATGTTGACTGTGTAAAATGTCTTCTTAACGGCGGTTGCGACGCAAACGCCATCAACAACGATGGCTGGAACGTGTCTCACGAAGCAGTGAGCACTGGAAACCCTGAAATCCTGTCACTTGTGCTTCAACATCGAGACTTTCAAAGAGGAAGTCAAAGACTTGCAGGCATTCCTGAACTTCTTGATGAACTCAATGCTACCCCAGATTTCTATGTTGAAATGAGATGGGAGTTTACCAGTTGGGTACCATTTATGTCAAGAATGTGCCCTAGTGATACATACAAAATATACAAATGTGGTGCAAATGTACGTGCAGACACAACGCTGATTGGTTTTGACCAAAATGATTGGCAAAGAGGAAGCAGGAGTTATATTTTTAAGGGTGGAGCGGAGGGAGGAGAATTCTTAGAGGTTGATCATGACAAGAAAAGGTTCTTCAAGGAAACCTTAAGCATTAGGGAAAATTTTCGTGATCTGGAGGCTCTTAAACCATCAGATGAAGCTGTAAGCAACAGACTAACATCACCAGCTGTTGCTACCATGTTGAATACAGACAACATAGCTTTTGCGAGACACAAGACCATGTGGGGGTGGGGTGGGGATAAAACAGAAACTATTAATGGATTTGAATGCAAAGTGTACACAGCCAGTGGAGTGGAAATTCTTACTAAAACAAGAGTGGAACATTTGAATGCAGAGGACAAACAAGCTGCACAGAATACAAATGAAACATTTGCTGCAACTGGATTTCAAACACTCCTAGGGATCGAAGAGGAGAGCTTTTTAACCAACCAAGAGGATGAACAGAACAGCTGTGTTGATCCAACATCTTTGAATCCTTACCAAATGACCATAGAGGAATATTTCAACCCATCTTCAGAGCCAAATGCCAGAGATATTGGAAAACTGAAAGAAATGACAGTGAAAAAACAGAAGTTTAAAGCTACCATTTCGATGGCTGATAAACACCCTTTGTCTCTTGGGGAGCAAGTACTTCCAATCATCAAGTTGTTGGCTATCAGCAATACTCATTTTGCAAAACTAAGGGACTTTATTGCACTTCATTTACCAGCTGGATTCCCGGTCAAAATAGAAATTCCACTATTTCATGTCCTCAATGCCAAAGTAACATTTGGGAATATTGGTGGAGTAGAGTCCCCAGTAAATGGAGTCCATGCTATAAAATATGATATTCATGAGATTGACGGAGAAGGTGATACTCTGGAACAGGAGGACCAATCACTGTCACTTGCAGCCCGCTGTGTCATAGAAAGCACCTGTTTTGAGGCTCCAGCAGAGTACAGAGAGGTGAATTTGGATCAACCTGTTGCTCCTCTTGTAGAGCAAGAAGATGAACTTCTTCGATTGGCAATGCAGCAGAGTTTGCTGGAGTATCAACAAGATCCTGCAAATATTGCATCTTTACAGACCTTGGCGGAAAGTCGACAGGATGCAGATCATGATCTACAATGTGCAATTCAGGAGAGTATGAAGGAGAAAGGCAACACGGAAAATGAAGGTGACACACAAGACCCTGCAGAAACTAGACAACAAGGGGATGGAGCAGTCATGTTTGATGAAGATTTGCAGTTGGCCATGGCGTTATCAGAACAACAGCTAGAAGAGGATGAGAGGCTACGAAAACAAGAAGATGAGGAATTGGAGAAAGTCATCCAGCTCTCTCTTATGGACAAGTAATGCCACAACATTATCTTCTAGAATTAGTAGGTTGCCTTGGTAAGGAACAATTTTTTTATGTTGTGAAAGTGAAGGGTGGCACATTATAAGAACAATTTGGTGGTTATTTTTTCCAATTTTTTGGCCAAACTTTTAGTCAGAAAATGGTGTGGCACCAAGAAGAAAATTTAGTAATAAACCATAAGTTATTGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86YJ7	Ankyrin repeat domain-containing protein 13B OS=Homo sapiens OX=9606 GN=ANKRD13B PE=1 SV=4
Q5F259	Ankyrin repeat domain-containing protein 13B OS=Mus musculus OX=10090 GN=Ankrd13b PE=2 SV=1
Q6PD24	Ankyrin repeat domain-containing protein 13D OS=Mus musculus OX=10090 GN=Ankrd13d PE=1 SV=2

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Alpha-Helix\|UIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF11904 all species →	GPCR_chapero_1	GPCR-chaperone	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR003903 all species →	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR021832 all species →	Family	Ankyrin repeat domain-containing protein 13	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12447 all species →	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21437	ANKRD13; ankyrin repeat domain-containing protein 13	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.