Gene detail

Detailed information of g20423.t1.1 in Hydra viridissima

Genomic Location: :...
NR annotation: WP_230661730.1, RluA family pseudouridine synthase [Bordetella petrii]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q8ZFU1	Ribosomal large subunit pseudouridine synthase C OS=Yersinia pestis OX=632 GN=rluC PE=3 SV=1
Q9CM51	Ribosomal large subunit pseudouridine synthase C OS=Pasteurella multocida (strain Pm70) OX=272843 GN=rluC PE=3 SV=1
P59835	Ribosomal large subunit pseudouridine synthase C OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) OX=233412 GN=rluC PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01479	S4	S4 domain	Domain	Interproscan
PF00849	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050188	Family	RluA Pseudouridine Synthase	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR036986	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan
IPR002942	Domain	RNA-binding S4 domain	Interproscan
IPR006145	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR006225	Family	Pseudouridine synthase, RluC/RluD	Interproscan
IPR006224	Conserved_site	Pseudouridine synthase, RluA-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000455	Biological Process	enzyme-directed rRNA pseudouridine synthesis	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06179	rluC; 23S rRNA pseudouridine955/2504/2580 synthase	EC:5.4.99.24	Ribosome biogenesis	ko03009	deepkoala