Gene detail

Detailed information of g20468.t1 in Acropora digitifera

Genomic Location: chr9Alt:23580071...23598719
NR annotation: XP_015774511.1, PREDICTED: ornithine decarboxylase-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr9Alt.g20468.t1

AGTAGATAAGATTATAAATTTTAACTTGAAAAAGTAGACAGGTGGTTAAGTTTTAAGGTGTAAGAAAGTTGTTATTTTACATAAAAATGCTGTAGAAGTTATGTTTTGAACAGTCCTTACACGGTCTCGCACTTTAAAACTCAATGCAATTAACTGCATTTGCATGGGGCGGCCACACGACGAAAATTTATTCTAACTGCCCAGAAGCTGAATTCTTGAAGAAGGAGAAGTTCGAGTTCACATTTAACGTGGATTCTGATCCCAGCTAACGTTTGCTAAGGGCGTATCTTGGTGTTAACAGTCGTGCCTTGTACTAATTTATTACAAAAATGGACGCTGTTCATGAGGACATTGGTGTTGGGATAAGAGTTGTTGATGATGGATTGTCTTGTGTGGACATCATTGAACAGAGCTTAAAGGCTGTAGGAAGAGAGGAAAAAGATGATGCCTTCTATGTCGTAGATTTGGGTGATATTCTCCTAAAGCACAAGAAGTGGGTTTCCCAATTACCCAGGGTAGAACCTTTCTATGCTATGAAGTGCAACAATGATCCAAATGTTTTGAAACTGTTGGCAACATTAGGAATAGGTTTTGATTGTGCAAGCAAGATCGAGATGCAGACAATGTTGGGTTTGGGTGTGCAGCCCTCAAAAATTGTGTATGCCAACCCTTGTAAACAGGCATCCCACATCAGGTTCTCAGCAGAATGTGGGATCTCCCTCATGGCATTTGATAATGAGATGGAACTTCACAAGATTAAGAAGTTATACCCCACCGCAAGGTTGCTTCTTCGCATCCGCACTGATGACTCGAAATCACTCTGTCAGCTTGGAATAAAGTTTGGTGCTCCTTTGAAACAGTGCCGTGATCTTCTTAAAGTCTCCCAAGATTTAAAGTTGAATGTAATTGGAGTGAGCTTTCATGTTGGCAGTGGATGTTACGATCCAAATGCATTTGGTACAGCTGTCTTGGCTGCACGCAGTGTCTTTGATCTTGCTGCTCAAATGGGATTTGAATTTACCATGTTGGACATTGGAGGAGGATTTCCTGGAGCTCCAGATGCGGCCATCACATTTGAGGAGGTCTGTGACATACTGAACCCCCTGCTAGATGAGCAGTTTCCAGCCAGCTCTGGTGTAAGAATTATAGCAGAACCAGGACGTTTTTATGCTGCCTCTGCCTTTACTCTTGCTGTCAATGTGGTTGCACGCCGCACTGTGAAGAAGAGCCAGCTTAAAGAGGGTGAAAGGGCTTTGGAAGCTGCTGGAGTGAAAGAGTCTGATGAACTGGGCTTTATGTATTATGTGAATGATGGCGTTTATGGTTCATTCAACTGCTTGGTATTTGATCATGCTACAGTTCACCCTGAGGTGCTTGATGCAAAAGGGAAGGATGCAGTCAAATTCCCTTCTAGTATCTGGGGTCCCACTTGTGATTCCCTTGACTGCATCAGCAAGAGTGTTATGTTACCAAAGGTTGATGTCGGAGAATGGCTGTATTTTAGAAACATGGGGGCTTACACTTGCTCAGCAGCTTCTACTTTCAATGGACTCAAGAAACCTTCAAAGTTTTATGTCATTTCTCGGAGGGACTGGCTAACATTTTACGAAGAGGTAGACTCTGGCTTCAATTCGAGCATTCCCTGCCGTGCAGCACTGGATCATAAAGCTGCTCCCATCAGTGTTGGTCCTGAATTGTTGAGAATGTCAGTTTTCCCCTATAGCTGAAACTAGAGATTTCTTAGTTTGCTCCTTCATAATGTACTAAGTGCATTGCTTGTTATATTCCATCAGTTTGAGTTTATCACTTGATTTAACACAATTTATTATAGTAAGCTAGCCCCAATGTTTTAATATCACCTTCCTGGTTATTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATCATCATCAATTTGGGCTTCAGTGGTCGCCTGAAATAGTTTTTACTGGCGAGTCACAAGATATGCAAGCACTTTCTTCAATGGACCTTAAACTGCAGTAAATTATTTTTTGTTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P27119	Ornithine decarboxylase OS=Mus pahari OX=10093 GN=Odc1 PE=2 SV=1
P09057	Ornithine decarboxylase OS=Rattus norvegicus OX=10116 GN=Odc1 PE=1 SV=1
P00860	Ornithine decarboxylase OS=Mus musculus OX=10090 GN=Odc1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02784 all species →	Orn_Arg_deC_N	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	Domain	Interproscan
PF00278 all species →	Orn_DAP_Arg_deC	Pyridoxal-dependent decarboxylase, C-terminal sheet domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002433 all species →	Family	Ornithine decarboxylase	Interproscan
IPR000183 all species →	Family	Ornithine/DAP/Arg decarboxylase	Interproscan
IPR009006 all species →	Homologous_superfamily	Alanine racemase/group IV decarboxylase, C-terminal	Interproscan
IPR022644 all species →	Domain	Orn/DAP/Arg decarboxylase 2, N-terminal	Interproscan
IPR022643 all species →	Domain	Orn/DAP/Arg decarboxylase 2, C-terminal	Interproscan
IPR029066 all species →	Homologous_superfamily	PLP-binding barrel	Interproscan
IPR022653 all species →	Binding_site	Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11482 all species →	ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006596 all species →	Biological Process	polyamine biosynthetic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004586 all species →	Molecular Function	ornithine decarboxylase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0033387 all species →	Biological Process	putrescine biosynthetic process from ornithine	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01581	E4.1.1.17, ODC1, speC, speF; ornithine decarboxylase	EC:4.1.1.17	Efferocytosis	ko04148	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.