Gene detail

Detailed information of g20484.t1 in Acropora digitifera

Genomic Location: chr9Alt:23838081...23858184
NR annotation: XP_029185342.2, acetyl-coenzyme A synthetase, cytoplasmic-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g20484.t1

ATGGAGTCTTCCCAAAACGAACACGAAAAAGAGCTTTCAGGATGGTTTTATCCTTCGGATAAAATGCAGTCCGAGGCGTATGTGTCCAGCATGGATAACTATAAGGAAATGTACACGAAATCCATCGAAAATCCAGCTGAATTTTGGGGAGACTACGCGAGCGAGTTCTTCTGGAAAGTCTCACCAAGCAAGGATCCGGACAAGTTCATGCGTTTCAATTTTGATACCAAGAAAGACAGAGTCCTGATCAAATGGATGGAAGGAGCTGTCACTAATATCTCGTACAATCTGCTGGACAGAAATGTGGGAAGAGGACTCGGTGAAACTGTAGCGTTTTTCTGGGAAGGGAATTCACCTGAAGATAGCAAGAAAATCACCTACAGAGAACTGTTATCTGAAGTATGCAAGTTTGCTAATGTGCTGAAAGACAAAGGCATCCAGAAAGGAGACCGTGTTGCAATCTACATGCCAATGATCATTGAGTTGGTGGTTGCTATGCTTGCCTGTGCAAGAATAGGAGCTGTGCATTCCATTGTGTTTGGAGGATTCTCCGCTGAATCATTAGCTGAAAGAATTCTCGACTCCACATGCAAGATACTCATCACTGCTGATGGTTCTTACAGAGGAAAAAAGCTCATTGACTTAAAGGAGATTTCTGATGCTGCCATAGCCAAGTGCAGAGAAAAAGGCGTAAGTCTGGAGAGCTGTATCGTAGTTCAGCATGTTGGAGGGGACTCAAAGAATGGTTGTGCATCACCTGTGTCAAAGAAACCTTGTCCAGATTTAAAGACAAATTTTGATGAAAGTGGGATTGACTGTTGGTGGCATGACCTGATGTTATCAGCAAGCGACAAGTGTGAACCATGCTGGACAGATGCAGAGGATCCCTTGTTCATGCTTTATACCAGCGGATCAACAGGAAAACCAAAAGGAGTTCTGCACACAGTTGGTGGCTACATGCTGTACACTGCTTGCACATTCAAGTATGTATTTGATTATCACCCAGGTGAAGTTTATTGGTGCACTGCAGATATTGGCTGGATAACTGGACACAGTTACATAACATACGGTCCGATGGCAAATGGTGCGACGAGTGTGCTGTTTGAAGGAACGCCATTTTACCCTGACTCTGGTCGTTTCTGGGATGTTGTTGACAAGTACAAGGTGTCCAAATTTTACACTGCTCCCACAGCTATCAGAGCTCTCATGAAATTTGGAAAAGCCGTCGTCAAGAAGTACAACCGCAAGTCTCTCAAAGTTCTTGGAACTGTAGGAGAACCAATTAATCCTGAGGCTTGGCTGTGGTATTACCGTACCGTGGGCGATGAAAGGTGTTCGATTGTGGATACATACTGGCAAACGGAGACGGGTGGTCATGTCATTACACCGCTTCCAGGAGCAACACCCATGCGACCAGGCGCTGCATCTTTCCCTTTTTTCGGTGTCGTGCCAGCCATTGTTGATGAACAAGGGAATGAGCTTGAAGGAGCTTGTGAAGGATTTCTGGTGATGAAACAAGCCTGGCCAGGAATGGCGAGAACAATTTATGGCAACCACGAGAGGTTTGAGGAGGTCTACTTTTCCAAGTTCCCTGGTTACTACACGACAGGCGATGGTTGTAAGCGCGACAGTGAAGGCTTCTACTGGATCACCGGACGCACTGATGACTGCATGAATGTCTCTGGTCATCTGTTGAGCACGGCGCAGATTGAGAGCGCTTTGGTCGAGCACAACGCCGTCACCGAGGCCGCCGTCGTGTCTTGTCCGCATAAAGACAAAGGAGAAGGGATTTATTGCTTCACAACTCTGATGGAGGGAGTGGAATTCAGTGATGAGCTCAAGAATGAACTCAAAGTAAAAGTTCGTACCAAAATTGGGCCATTTGCTACACCAGACGTTATCCAAAGTGCACCTGGACTTCCAAAGACTCGGTCAGGAAAGATTATGAGACGGGTTTTAAGGAAGATAGCAAGAAATGATCGCAACATTGGTGATACAACAACAATGGCTGATTCCACCGTGGTTGAAACCTTGTTCGAGAACAGACCTCACGTTGACTTCATGCCTGAGTAA

Transcript

chr9Alt.g20484.t1

ATTCATCCTGGTAGCTTGCATTCGAACATGGAGTCTTCCCAAAACGAACACGAAAAAGAGCTTTCAGGATGGTTTTATCCTTCGGATAAAATGCAGTCCGAGGCGTATGTGTCCAGCATGGATAACTATAAGGAAATGTACACGAAATCCATCGAAAATCCAGCTGAATTTTGGGGAGACTACGCGAGCGAGTTCTTCTGGAAAGTCTCACCAAGCAAGGATCCGGACAAGTTCATGCGTTTCAATTTTGATACCAAGAAAGACAGAGTCCTGATCAAATGGATGGAAGGAGCTGTCACTAATATCTCGTACAATCTGCTGGACAGAAATGTGGGAAGAGGACTCGGTGAAACTGTAGCGTTTTTCTGGGAAGGGAATTCACCTGAAGATAGCAAGAAAATCACCTACAGAGAACTGTTATCTGAAGTATGCAAGTTTGCTAATGTGCTGAAAGACAAAGGCATCCAGAAAGGAGACCGTGTTGCAATCTACATGCCAATGATCATTGAGTTGGTGGTTGCTATGCTTGCCTGTGCAAGAATAGGAGCTGTGCATTCCATTGTGTTTGGAGGATTCTCCGCTGAATCATTAGCTGAAAGAATTCTCGACTCCACATGCAAGATACTCATCACTGCTGATGGTTCTTACAGAGGAAAAAAGCTCATTGACTTAAAGGAGATTTCTGATGCTGCCATAGCCAAGTGCAGAGAAAAAGGCGTAAGTCTGGAGAGCTGTATCGTAGTTCAGCATGTTGGAGGGGACTCAAAGAATGGTTGTGCATCACCTGTGTCAAAGAAACCTTGTCCAGATTTAAAGACAAATTTTGATGAAAGTGGGATTGACTGTTGGTGGCATGACCTGATGTTATCAGCAAGCGACAAGTGTGAACCATGCTGGACAGATGCAGAGGATCCCTTGTTCATGCTTTATACCAGCGGATCAACAGGAAAACCAAAAGGAGTTCTGCACACAGTTGGTGGCTACATGCTGTACACTGCTTGCACATTCAAGTATGTATTTGATTATCACCCAGGTGAAGTTTATTGGTGCACTGCAGATATTGGCTGGATAACTGGACACAGTTACATAACATACGGTCCGATGGCAAATGGTGCGACGAGTGTGCTGTTTGAAGGAACGCCATTTTACCCTGACTCTGGTCGTTTCTGGGATGTTGTTGACAAGTACAAGGTGTCCAAATTTTACACTGCTCCCACAGCTATCAGAGCTCTCATGAAATTTGGAAAAGCCGTCGTCAAGAAGTACAACCGCAAGTCTCTCAAAGTTCTTGGAACTGTAGGAGAACCAATTAATCCTGAGGCTTGGCTGTGGTATTACCGTACCGTGGGCGATGAAAGGTGTTCGATTGTGGATACATACTGGCAAACGGAGACGGGTGGTCATGTCATTACACCGCTTCCAGGAGCAACACCCATGCGACCAGGCGCTGCATCTTTCCCTTTTTTCGGTGTCGTGCCAGCCATTGTTGATGAACAAGGGAATGAGCTTGAAGGAGCTTGTGAAGGATTTCTGGTGATGAAACAAGCCTGGCCAGGAATGGCGAGAACAATTTATGGCAACCACGAGAGGTTTGAGGAGGTCTACTTTTCCAAGTTCCCTGGTTACTACACGACAGGCGATGGTTGTAAGCGCGACAGTGAAGGCTTCTACTGGATCACCGGACGCACTGATGACTGCATGAATGTCTCTGGTCATCTGTTGAGCACGGCGCAGATTGAGAGCGCTTTGGTCGAGCACAACGCCGTCACCGAGGCCGCCGTCGTGTCTTGTCCGCATAAAGACAAAGGAGAAGGGATTTATTGCTTCACAACTCTGATGGAGGGAGTGGAATTCAGTGATGAGCTCAAGAATGAACTCAAAGTAAAAGTTCGTACCAAAATTGGGCCATTTGCTACACCAGACGTTATCCAAAGTGCACCTGGACTTCCAAAGACTCGGTCAGGAAAGATTATGAGACGGGTTTTAAGGAAGATAGCAAGAAATGATCGCAACATTGGTGATACAACAACAATGGCTGATTCCACCGTGGTTGAAACCTTGTTCGAGAACAGACCTCACGTTGACTTCATGCCTGAGTAACAATTTTTGCAGTCTTATATGACGTGTTTCCTGAACCTGAATATTTGAAAGCAGCGTTGTTCTCTGTTTATGCCCTTTCATAAGGGCTTGGAAAATAAAAATGCGACCCGGGAAAAATTTATTATTAAGCTCTGGAAGAACATAATTTTAATTTAAGCTATTTTAAATTAATTAAATTAAGAAATAATATTTCCGTTTTTGACGGGAGATAAAATAATTCTTTGTTTTTTCATTTAGCAAGCGAACCATTTTGAACTTGATTCGAGAAGATGTCGCCGCCATTAAGTTGTCTGTTTTTTTGTTTTGTTTGGGCTTTTGCAATTTGAAAGTCATTAATTCATTGGGCAATTTATTGAAATTTTCGTCAACTAGGTGAGTTAGTTTTGAGGTCAAACATTGATTTATTGTTCCTTATTTGGCTTTGTTTTAACTGTATCTAGATTTCATTTTTAATTTTTTTTCCATTTATAACTAATCGAGGAGTAGCCAAACTTTTAAAATCGGGCTCAACTTTTATGATAGCAGCTCTACTTAAACACCCTGTTAGGATTATTTTGGTCAGCTCCGTTTTCTCCATACGTGTAGTAATTTTGTCGTTAGTGCGTGCATACATGCGATAATTCTCTATAATGATTACACAAGCAGTCGCGAAATACTTCCCCTCTACAATGAATTAACAGCGGTTTCACGCGTATTTGTACTTCATTAACCCACTTAACATTAGCGACATTAATAAACAACGGTTTCACGCGTATTCGTACTTCATTAACTCACTTAACATTAGCGACTCTAGTCTATCGCAACTTTTCAAGGAAAACGCAACCCCAAATATAACTTAGAATATAACTTAGCGTTGTATTAAGTATTTCGTGATTAAAGTATTAAATTGGCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QXG4	Acetyl-coenzyme A synthetase, cytoplasmic OS=Mus musculus OX=10090 GN=Acss2 PE=1 SV=2
Q9NR19	Acetyl-coenzyme A synthetase, cytoplasmic OS=Homo sapiens OX=9606 GN=ACSS2 PE=1 SV=1
Q9VP61	Acetyl-coenzyme A synthetase OS=Drosophila melanogaster OX=7227 GN=AcCoAS PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13193 all species →	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF16177 all species →	ACAS_N	Acetyl-coenzyme A synthetase N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025110 all species →	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan
IPR032387 all species →	Domain	Acetyl-coenzyme A synthetase, N-terminal domain	Interproscan
IPR011904 all species →	Family	Acetate-CoA ligase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24095 all species →	ACETYL-COENZYME A SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003987 all species →	Molecular Function	acetate-CoA ligase activity	Interproscan
GO:0006085 all species →	Biological Process	acetyl-CoA biosynthetic process	Interproscan
GO:0016208 all species →	Molecular Function	AMP binding	Interproscan
GO:0019427 all species →	Biological Process	acetyl-CoA biosynthetic process from acetate	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01895	ACSS1_2, acs; acetyl-CoA synthetase	EC:6.2.1.1	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.