Gene detail

Detailed information of g20498.t3 in Acropora digitifera

Genomic Location: chr9Alt:23976695...23981411
NR annotation: XP_029185416.2, peroxidasin-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g20498.t3

ATGTTTATTGTAAAAGAAAAGCGAAGTTCTGAATGTGTTCCATGTTCCCATCTGTTTTTTTTGGTTCTTGATAGCATAACCATTGGCATTTTCCTAGCCGTTTGCGTTTCAAACTTGCACCAAGTCTCGTGCTCAGAAGATGCGGCGCAGCTGGTCCTTGACACACTGGCTCTGGAAAATTGTGACCCTCTAAAAATGCGAATGGCATGCCTTCTAAATCCCTATCGCTCAATTGACGGAACATGCAACAATCTTTGCAACATAAGCCGAGGATCTATCCAACAACCTCTGCGACGTTTCCCGGGTCTCAACCCTCCAACTCAATTTGAAGGAGAGAACCTTCCTCGACGGTTAGCTGAAAGTGGAAACGAACTCCCCAACGCTAGAAAAGTCAGCAGGACCGTTTTTAGATCCAACACAGGCAACGAGAATGGTCCGCCAGATCAAAGTCACATGGTCATGACGTGGGGACAGTTCCTTGATCATGATGTCACTCTGACAGAATTAATCGAGGGAGTGGATTGTGGAGGCAACAATGAACCTTGTGTGCGGAATATATCCGCGTGTTTTGGCATCGATATTTTGAACGGAAATCAGCTACAATTCAACCCAGAGGCACAGTGTATCCCACTCAGGAGATCTCGAGTCAGCCCAATTGGAGAACAGTTCAACGCAATCACAACTTATATCGATGGGTCACAGATTTATGGCTCAGAATTGGAGTTGTCTCTGCGGTTACGTGACTCGAATGCGAAATTGGGGCTTTTGAAAGTTATTCCTCATGTAGATTCTAACGGAGAGCCGATACTGCCACCAGCTGACGATGAAGCTTTTTGCCGATCCCCCAATCCAGTGGTGCAGCATTGCTTTTTGGCGGGAGACGTTCGCGTGAATGAAAATCAAGCTTTGATGGCAATGCATACCATTTGGGTTCGAGAGCACAATCGCATCGCCTTAGCTCTGCACGTGTTGAATCCAGAATGGGATGACGAAAGACTCTACCAGGAGGCGCGTAAAATTGTCATTGCACAATTGCAACATATCACTTACAATGAATGGCTGCCAGCTCTCTTTAATGTCGATGTGTTGAATAGAACCGGACTTCTCCTGGAAGAAGGCAATCAGACATTTACGGAATACGACCCCGATGTAGATCCAACCATAATCAACTCTTTCGCCACAGCAGCTTTACGAATGGGACACACCCTTATTAGGAACGACTTCGTCCTTTTAAACGACCTATACCAAGCAAGAGGATTTGGCAACCCAACTGCCATACCAGTCAGTGACTTTTTCAACCCGTTTAGGCTGTTTCAACCAGGGCCTAACGTCTATGGTGGACTTATGATAGGCTTAAATGGCCGAAGTATGCAGCGTTTTGACAGAATCTTTGTACCTAACATACGTGAACGACTCATCATTGAAGGGGACATAGTGGGAGATCTACCAGCCATTAATATACAACGTGGTCGCGATCATGGCTTGCCTGGGTACGTGCGGTTCCGTGAGGCATGCGGAGGCAATCCGGTGAATTCCTTTACCGATCTAGACGATACAACTCCACTGGATAAAATATGGGATCTGCAAGAAGCTTATGACAACTTGTTAGACATTGATTTGTTTGCCGGTGCCATGCTGGAATCCCCTCTTCCAGGAAGCCAACTTGGTTTCACTTTCACTTGTATTCTTACGGAACAGTTTCACAACTTGCGATTTGGTGATCGCTTCTGGTATGAGAGAGACGACCATCAAACAGGATTCACGCTTCCACAGCTGATAGAAATACGCAAGAGCACTCTGGCTCGAGTTATCTGTGACAACGCGGATGGCGTAGCACGCATTAACCAAAACGTGTTCATAAATTTTGGAAGAGTGGTTGTCGATTGTGACAAAGTGTCCTTTGTCAACTTGAATGTTTTCAAAGAAGGTAAGTATTTTTATGTGACAGCACAATACACTTATTCCGTTAATTCTACCTGTCGTCCGATTGGGGAAATGTAA

Transcript

chr9Alt.g20498.t3

AGACTTAACTGCGATTAACACGCACTGCATGTTTATTGTAAAAGAAAAGCGAAGTTCTGAATGTGTTCCATGTTCCCATCTGTTTTTTTTGGTTCTTGATAGCATAACCATTGGCATTTTCCTAGCCGTTTGCGTTTCAAACTTGCACCAAGTCTCGTGCTCAGAAGATGCGGCGCAGCTGGTCCTTGACACACTGGCTCTGGAAAATTGTGACCCTCTAAAAATGCGAATGGCATGCCTTCTAAATCCCTATCGCTCAATTGACGGAACATGCAACAATCTTTGCAACATAAGCCGAGGATCTATCCAACAACCTCTGCGACGTTTCCCGGGTCTCAACCCTCCAACTCAATTTGAAGGAGAGAACCTTCCTCGACGGTTAGCTGAAAGTGGAAACGAACTCCCCAACGCTAGAAAAGTCAGCAGGACCGTTTTTAGATCCAACACAGGCAACGAGAATGGTCCGCCAGATCAAAGTCACATGGTCATGACGTGGGGACAGTTCCTTGATCATGATGTCACTCTGACAGAATTAATCGAGGGAGTGGATTGTGGAGGCAACAATGAACCTTGTGTGCGGAATATATCCGCGTGTTTTGGCATCGATATTTTGAACGGAAATCAGCTACAATTCAACCCAGAGGCACAGTGTATCCCACTCAGGAGATCTCGAGTCAGCCCAATTGGAGAACAGTTCAACGCAATCACAACTTATATCGATGGGTCACAGATTTATGGCTCAGAATTGGAGTTGTCTCTGCGGTTACGTGACTCGAATGCGAAATTGGGGCTTTTGAAAGTTATTCCTCATGTAGATTCTAACGGAGAGCCGATACTGCCACCAGCTGACGATGAAGCTTTTTGCCGATCCCCCAATCCAGTGGTGCAGCATTGCTTTTTGGCGGGAGACGTTCGCGTGAATGAAAATCAAGCTTTGATGGCAATGCATACCATTTGGGTTCGAGAGCACAATCGCATCGCCTTAGCTCTGCACGTGTTGAATCCAGAATGGGATGACGAAAGACTCTACCAGGAGGCGCGTAAAATTGTCATTGCACAATTGCAACATATCACTTACAATGAATGGCTGCCAGCTCTCTTTAATGTCGATGTGTTGAATAGAACCGGACTTCTCCTGGAAGAAGGCAATCAGACATTTACGGAATACGACCCCGATGTAGATCCAACCATAATCAACTCTTTCGCCACAGCAGCTTTACGAATGGGACACACCCTTATTAGGAACGACTTCGTCCTTTTAAACGACCTATACCAAGCAAGAGGATTTGGCAACCCAACTGCCATACCAGTCAGTGACTTTTTCAACCCGTTTAGGCTGTTTCAACCAGGGCCTAACGTCTATGGTGGACTTATGATAGGCTTAAATGGCCGAAGTATGCAGCGTTTTGACAGAATCTTTGTACCTAACATACGTGAACGACTCATCATTGAAGGGGACATAGTGGGAGATCTACCAGCCATTAATATACAACGTGGTCGCGATCATGGCTTGCCTGGGTACGTGCGGTTCCGTGAGGCATGCGGAGGCAATCCGGTGAATTCCTTTACCGATCTAGACGATACAACTCCACTGGATAAAATATGGGATCTGCAAGAAGCTTATGACAACTTGTTAGACATTGATTTGTTTGCCGGTGCCATGCTGGAATCCCCTCTTCCAGGAAGCCAACTTGGTTTCACTTTCACTTGTATTCTTACGGAACAGTTTCACAACTTGCGATTTGGTGATCGCTTCTGGTATGAGAGAGACGACCATCAAACAGGATTCACGCTTCCACAGCTGATAGAAATACGCAAGAGCACTCTGGCTCGAGTTATCTGTGACAACGCGGATGGCGTAGCACGCATTAACCAAAACGTGTTCATAAATTTTGGAAGAGTGGTTGTCGATTGTGACAAAGTGTCCTTTGTCAACTTGAATGTTTTCAAAGAAGGTAAGTATTTTTATGTGACAGCACAATACACTTATTCCGTTAATTCTACCTGTCGTCCGATTGGGGAAATGTAAGGCAGAAGCATTTTTTCAATTTGTTTGTAAAGACACTGGCAAATGCGCAAATATAAGTGCTCACCTCTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IGL7	Peroxidasin OS=Xenopus tropicalis OX=8364 GN=pxdn PE=2 SV=1
Q92626	Peroxidasin homolog OS=Homo sapiens OX=9606 GN=PXDN PE=1 SV=2
G5EG78	Peroxidasin homolog pxn-2 OS=Caenorhabditis elegans OX=6239 GN=pxn-2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03098 all species →	An_peroxidase	Animal haem peroxidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019791 all species →	Family	Haem peroxidase, animal-type	Interproscan
IPR050702 all species →	Family	Peroxidase Activity and Reactive Species Generation	Interproscan
IPR037120 all species →	Homologous_superfamily	Haem peroxidase domain superfamily, animal type	Interproscan
IPR010255 all species →	Homologous_superfamily	Haem peroxidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11475 all species →	OXIDASE/PEROXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004601 all species →	Molecular Function	peroxidase activity	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19511	PXDN, VPO1; peroxidase	EC:1.11.1.7	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.