Gene detail

Detailed information of g20562.t1 in Acropora digitifera

Genomic Location: chr9Alt:24799170...24857043
NR annotation: XP_029199195.2, VPS10 domain-containing receptor SorCS1-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g20562.t1

ATGGCTTCTCGTTCGAGACTTTGTGTTTATCTTTTCCTCGGGGCCTTGTTCCCGACGTTTGCAAATTGCATTCGTCCATTCAGGGTTCCAACGAATCTCTTCGTTCAAGGCACTTCGCCGCATACTCTTCCAGAAGGAATCAGAGAATTACGTCGTGATGTTCGCGAACCAGAGGAAGGAATCCCTGATGAGTATGCAGAAACTTTTGAAGGGTTGCATAATCGATTTCGGCGTTCACTTAACGAACCTACCCCGAACATTACCGTTCAAACCATTGGAAGTTTTGACTCTCTTTTTATGTACTGGCCTTCAAATTCCGGTAATGAAAACGTCATCTTCCTTCTTGGCAAGACGAAAAGTAAAAGCAGTGGCCAAATTATTAGTAGCAAGGTTATGGTGTCGCACAACTACGGCAGGAGCTTCACAGAATGGGTTGGCCCGACTCCGACCAGAACTCCAGGTTCACCAAGACCACTGATCGATCAAATCTACTGTTCCACCGTTGATCCTAAACTCTGCATTTTATCAGACATAAAGAACAAGAAGATTTATCACACAGAGGATATGTTGAATTTTTCAGAGAAATCTGTTGTATTTGTTCCATCCTACATCACGTTTCATCCATCCAGTGCCAGATTTGTCATGGCGTATGACAGCACCACAGAAACGCTTTATTGGTCGGAGGACAAGGGTCTATCATTCAATTTGCTGTCAGGGAGTACTAAGTCATTTCACTGGGGAATAGAAGGCATTCACAGTCCTGAGATAGTATTTGTGGAAGTTTTTGGTGGACACTCAGATGCAAGGCCACACAATAAAACGTCTGTTAAGATGTATAAGAAAGGGAAGTCCCTGACAACAGTTGCAAGTGATTTGGATGAATTTGAAATCATGAAAAATTACATGTTTATCACTCAAACGAATTCAGTGGATAAAAATACCATTATGCAGGTTGCCAAGATTGTCAACGATGGTGAAATAAATTTTAAAACAGCACAATTTCCAGTGAATGAAGATAAAAGGGACTTTTTTGTGTTTCTTGTGGAGGATGATTTTGTGTTTGTTGTCATAAACCACTTGAGAAACTTGTCCAACTTATATATATCTGATACAGAGGGGGTGAAATATCAACTATCCCTCTCAAGGGTCTTGTATCATAACCCTTTCACAGATGTGTCATCTCCTTGGTTAAGAACTGTTGTACCTTATGCATTTGTTGATGTGGACAAAGTCAAAGGCATGCGTGGAATTTATGTGGCAACTCAACTGACTCCTGGACCAGTAGGAAAGAGACATTTATTGTCCTTAATAACTTATAACAGAGGTGCTACATGGCAGCGAATCCCATCGCCAACTAAGGACATCCGAGGAGGGAGAATTTACTGTTACCCTCCTAGCTGCTCCATTCATGTTAACCTCTTGTACGGTGCTGTGTACCGTGTATCACCATCTGATCGAATGATGACAAGTACAGCTGCACCTGGTCTGGTGGTAACATTAGGCGTTGCAAGTACTAATCTCAAGATTTACCCTGATCTGTTTATGTCATTAGATGGAGGTTTTAAATGGGAAAGGGTGCTGCGAGGAAAGTATGTGTTCACTTTTGGTGACCATGGAGGAGTCGTTGTCGCTGTTCCCTACAGGCGTTACACCAGGATCTTAAGGTATACCATTGATGGCGGAGCAAGTTGGAGATCACATATCTTTAGTCAGACAAGTATACTTGCTCGTGATGTTGTTACACAACCTGGTGAACGTTTGCCTGTCTTTGTCATTTATGGATTGGAAGGAAGTAGAACAGGCTCGTGGAAAGCTTTTCACATCAACATGACAACAGTATTGGGTCCGCTCTGTGATGAGTCTGGATATCTCAGTTGGCCAGATAAATGTCTTCTTGGTAGACAAAATTTGATTCAGTCAAGAAACTATTCAGTCTACTGCCACAATGGACGAAATTTCAGTCGAATCTTGTCGTATATGAACTGCCCTTGTACCAGGGAGGATTTCCAATGTGACTATAAGTTTGAAAGGAAGGAGGCGGAACATGAACGTTGTACTTTGATCAAAAAAAAAGCTGTAGATTTGATAAACCTTCTTGTTCCCGAAAACTGCTCTGAAGGCCAATACTATATGCGCAGTCAAGGTTACCGCAAAATTCCAGGTGACACCTGTGTGAATGGCTCTGAGGCTGACTACATGCCTGTGTCAACACCCTGCCCTATTGAAGCCCTGAAAGGTTTGGACCTGTCATGTAGAACAAAAACTAATGATCATTGTATGGCGTTACAAGTTGGAGACACTGCCTATTTTAATACTTCACTTCAGAGTGGTTACATTCCAAACATTGATTTTGGGTGGTCCTATGGTGATGAGCATAATGACACAGGGCATGGAGTGGACTTCGCTGCACAGAGTCATATGTTTCACGAACCAGGAACATTTGTTGTAACTGTAGTTGCATCAAATTCTCGAAGCATTTTGGTGCAGTGGTTGAAAATAAATGTCAGAGAAACCTTGCGTGCAGAGAGAATCAACATCAACTTTAGCCCTAAAAATCCTGAGGCAAATGAACCTGTCACCTTTTCTGCAAATTTAAATTACTCATATGAAGAAGTTGGCAATGTACGATATAAGTGGGCATACGGTAATCAGGTCATTACTAGTATGCATCCAGTTGCCACTCTTGTCTTCAAAAAAGCAAAGAATTATACTGTGCACATGTCCCTTGAGAATAGCGTGAGCACCATCAACATGAAGTTGTCTGTGCAAGTCACCCTTGATCTTAATGTGTTGAATATCAGTTCCAGAGCATTGAGTCCTCAGAGTATTGAAGTCAAATGGGAACCTCCTAAAGGGGCAGATAACTCCATAACTTACAAGGTTTTTCAGAGTACTTTAGGATATGATTCCTTCCAAGGGATCACCTGTGCAAGTGGTGGAAGAAGCAACACATCTTGTATAGTCAACAACCTGACTCCAGGCACAACTTACTACTTTAAAGTTCGGGCAGTTTCCGCTAGCAGAGCAGTTGGACCATTCTCAGACATAGGGATTGCCACAACAACCAACGTCCTTCCTGGACAGCCAAATAACCTGAAAGCATATGCCACCTCTACATCCATGATTCATGTAGTTTGGAGTGCACCCCCAAAGAACAATGTGCAGAAATACCAAATCCGCTATTGGTCAGAGATAGATGTCAGAGATGTCAAGATCATTGATAATGATAAGCGCACAGAAATTGACATCACTGGTTTGGAACAGGACACTTACTACTTCTTTGAGGTTTATGCTGAAAATGCAGTTGGGCCTGGCCCGATTGCTGGTCCAGTTCATGCTCTGACAAAGTTATCAAAGCCAACTCTTCCACCAAGAGATATTCAAAAGATTACACAAAATAAAACATGTCTAAAATTGATATGGAAAGCACCATATCATTCAAGTGTGGACAACAGAACTTTCCCAGCAAAGGGCTACAAGGTAATGGTGAACGGTGAAACTCTGGATGTGCCTTCAACATATGCAACTATCTGCAATCTCATTCCAGAAAAAGATTACAATGTAACTGTTCTGGCTTACTCTCACTCTGGTAATGGGCCTGCTGCTTATTTTAGAGTCACCTTGCAAGGAATGAGGGCTACTGTCCCGCGCAATTTCCACAGCCTGGTGTTGTCTCCGACAGAGGTGAAGCTTTCCTGGGGCCCAGCTCCCAATGAGAACTCCAGAATATCTGGATATACAATTTACCAGGTCTCTACAAAACCAGAAAAGAAATACTCTGTGTCAGGGAAGAAGACTAGCTTTATAGTGACAAACCTTAGAGCATTCACCAAGTACCAGTTTCAAATTTCGTCCAGAAATAACCTGGGTTCAAGTCCAAGGAGTGAAGCCTTGGAAGTTCTTACATCTCAGAGCAGTCCTGGAATTGTGCAATATTTAAATGCAGAGCTGGTTGAGCCCAAATCAGCATGCATCTTGTTGACCTGGTCCAAACCAGAAATGACCAATGGCCCCATCAAGAGCTATATGTTAAGGATTTCAAAGTCTGCTGTTGGCGTGTATGATGAAGCACCTGAACCAGAGATAATTGAAGTTCCTGCATCTTCCAGTTCATATCTGTTCAAAAATCTGTTTGGCAGTACATCTTACTCTTTGACTGTGTGGGCAAGAAACGATGCTGGAAGGGGATTGGTGCATATTGAACCCTTTACTAAGAAGACTGAGCCTGCTCCTAAGGGTGCAGAACACCTTCAAGTTCGATATTCTGGACAAGAGGTTGATGGGCGTGGTGCTCGAGACTTTGAAAAAGCATTTATTCAAGCCGCCAGCAGTAAAGCTGGAATATCAGATCTTCGAATCGCTGCCGTTGAGCTCAAAGACGGTCGTTTTGTGGAGTTTGACCTCCTCCCTCCACTGAACAGTACAGGTGTTGCAATGCACGTGGCAAAAGCTGCTCTCGACAGTGGGTTTAGCACTAAAGGAAACAACATTTCAGCTGGCAGTTTAAACCGACTTTATATTCACGATGGAAGAGACAAAAGTACTCATTCAGTGGCAGGCCCAAATGCAGGGGCTCAAACAGGTTCAGAATCAAGAAGCAGCTCAATAAAGACTCCTCTTGCTATTGCTATTCCTTTGGTATTAATAGTGCTGGCAATGATGTTTGGCTTGATATTCTACTTCATGAAATACCGAACACTTCAGAAGCGTTTCATTAATGTGGAGAACTGCCAAGATGGGGATGAGATGGATGCCTTTTACGGTGGTGATATGCAAGGAGAATCACCTGATGTTATTTTCAGCGATCAAACCCGAAAGGGAAGGAAGATATACAAAGATTCAGAGAAGGTTCCCCTTGAAGACCACGATGAACTGGCGATGATTTGA

Transcript

chr9Alt.g20562.t1

TACGTTCGTGTTGAAGGAGTGTACGTATGGCTTCTCGTTCGAGACTTTGTGTTTATCTTTTCCTCGGGGCCTTGTTCCCGACGTTTGCAAATTGCATTCGTCCATTCAGGGTTCCAACGAATCTCTTCGTTCAAGGCACTTCGCCGCATACTCTTCCAGAAGGAATCAGAGAATTACGTCGTGATGTTCGCGAACCAGAGGAAGGAATCCCTGATGAGTATGCAGAAACTTTTGAAGGGTTGCATAATCGATTTCGGCGTTCACTTAACGAACCTACCCCGAACATTACCGTTCAAACCATTGGAAGTTTTGACTCTCTTTTTATGTACTGGCCTTCAAATTCCGGTAATGAAAACGTCATCTTCCTTCTTGGCAAGACGAAAAGTAAAAGCAGTGGCCAAATTATTAGTAGCAAGGTTATGGTGTCGCACAACTACGGCAGGAGCTTCACAGAATGGGTTGGCCCGACTCCGACCAGAACTCCAGGTTCACCAAGACCACTGATCGATCAAATCTACTGTTCCACCGTTGATCCTAAACTCTGCATTTTATCAGACATAAAGAACAAGAAGATTTATCACACAGAGGATATGTTGAATTTTTCAGAGAAATCTGTTGTATTTGTTCCATCCTACATCACGTTTCATCCATCCAGTGCCAGATTTGTCATGGCGTATGACAGCACCACAGAAACGCTTTATTGGTCGGAGGACAAGGGTCTATCATTCAATTTGCTGTCAGGGAGTACTAAGTCATTTCACTGGGGAATAGAAGGCATTCACAGTCCTGAGATAGTATTTGTGGAAGTTTTTGGTGGACACTCAGATGCAAGGCCACACAATAAAACGTCTGTTAAGATGTATAAGAAAGGGAAGTCCCTGACAACAGTTGCAAGTGATTTGGATGAATTTGAAATCATGAAAAATTACATGTTTATCACTCAAACGAATTCAGTGGATAAAAATACCATTATGCAGGTTGCCAAGATTGTCAACGATGGTGAAATAAATTTTAAAACAGCACAATTTCCAGTGAATGAAGATAAAAGGGACTTTTTTGTGTTTCTTGTGGAGGATGATTTTGTGTTTGTTGTCATAAACCACTTGAGAAACTTGTCCAACTTATATATATCTGATACAGAGGGGGTGAAATATCAACTATCCCTCTCAAGGGTCTTGTATCATAACCCTTTCACAGATGTGTCATCTCCTTGGTTAAGAACTGTTGTACCTTATGCATTTGTTGATGTGGACAAAGTCAAAGGCATGCGTGGAATTTATGTGGCAACTCAACTGACTCCTGGACCAGTAGGAAAGAGACATTTATTGTCCTTAATAACTTATAACAGAGGTGCTACATGGCAGCGAATCCCATCGCCAACTAAGGACATCCGAGGAGGGAGAATTTACTGTTACCCTCCTAGCTGCTCCATTCATGTTAACCTCTTGTACGGTGCTGTGTACCGTGTATCACCATCTGATCGAATGATGACAAGTACAGCTGCACCTGGTCTGGTGGTAACATTAGGCGTTGCAAGTACTAATCTCAAGATTTACCCTGATCTGTTTATGTCATTAGATGGAGGTTTTAAATGGGAAAGGGTGCTGCGAGGAAAGTATGTGTTCACTTTTGGTGACCATGGAGGAGTCGTTGTCGCTGTTCCCTACAGGCGTTACACCAGGATCTTAAGGTATACCATTGATGGCGGAGCAAGTTGGAGATCACATATCTTTAGTCAGACAAGTATACTTGCTCGTGATGTTGTTACACAACCTGGTGAACGTTTGCCTGTCTTTGTCATTTATGGATTGGAAGGAAGTAGAACAGGCTCGTGGAAAGCTTTTCACATCAACATGACAACAGTATTGGGTCCGCTCTGTGATGAGTCTGGATATCTCAGTTGGCCAGATAAATGTCTTCTTGGTAGACAAAATTTGATTCAGTCAAGAAACTATTCAGTCTACTGCCACAATGGACGAAATTTCAGTCGAATCTTGTCGTATATGAACTGCCCTTGTACCAGGGAGGATTTCCAATGTGACTATAAGTTTGAAAGGAAGGAGGCGGAACATGAACGTTGTACTTTGATCAAAAAAAAAGCTGTAGATTTGATAAACCTTCTTGTTCCCGAAAACTGCTCTGAAGGCCAATACTATATGCGCAGTCAAGGTTACCGCAAAATTCCAGGTGACACCTGTGTGAATGGCTCTGAGGCTGACTACATGCCTGTGTCAACACCCTGCCCTATTGAAGCCCTGAAAGGTTTGGACCTGTCATGTAGAACAAAAACTAATGATCATTGTATGGCGTTACAAGTTGGAGACACTGCCTATTTTAATACTTCACTTCAGAGTGGTTACATTCCAAACATTGATTTTGGGTGGTCCTATGGTGATGAGCATAATGACACAGGGCATGGAGTGGACTTCGCTGCACAGAGTCATATGTTTCACGAACCAGGAACATTTGTTGTAACTGTAGTTGCATCAAATTCTCGAAGCATTTTGGTGCAGTGGTTGAAAATAAATGTCAGAGAAACCTTGCGTGCAGAGAGAATCAACATCAACTTTAGCCCTAAAAATCCTGAGGCAAATGAACCTGTCACCTTTTCTGCAAATTTAAATTACTCATATGAAGAAGTTGGCAATGTACGATATAAGTGGGCATACGGTAATCAGGTCATTACTAGTATGCATCCAGTTGCCACTCTTGTCTTCAAAAAAGCAAAGAATTATACTGTGCACATGTCCCTTGAGAATAGCGTGAGCACCATCAACATGAAGTTGTCTGTGCAAGTCACCCTTGATCTTAATGTGTTGAATATCAGTTCCAGAGCATTGAGTCCTCAGAGTATTGAAGTCAAATGGGAACCTCCTAAAGGGGCAGATAACTCCATAACTTACAAGGTTTTTCAGAGTACTTTAGGATATGATTCCTTCCAAGGGATCACCTGTGCAAGTGGTGGAAGAAGCAACACATCTTGTATAGTCAACAACCTGACTCCAGGCACAACTTACTACTTTAAAGTTCGGGCAGTTTCCGCTAGCAGAGCAGTTGGACCATTCTCAGACATAGGGATTGCCACAACAACCAACGTCCTTCCTGGACAGCCAAATAACCTGAAAGCATATGCCACCTCTACATCCATGATTCATGTAGTTTGGAGTGCACCCCCAAAGAACAATGTGCAGAAATACCAAATCCGCTATTGGTCAGAGATAGATGTCAGAGATGTCAAGATCATTGATAATGATAAGCGCACAGAAATTGACATCACTGGTTTGGAACAGGACACTTACTACTTCTTTGAGGTTTATGCTGAAAATGCAGTTGGGCCTGGCCCGATTGCTGGTCCAGTTCATGCTCTGACAAAGTTATCAAAGCCAACTCTTCCACCAAGAGATATTCAAAAGATTACACAAAATAAAACATGTCTAAAATTGATATGGAAAGCACCATATCATTCAAGTGTGGACAACAGAACTTTCCCAGCAAAGGGCTACAAGGTAATGGTGAACGGTGAAACTCTGGATGTGCCTTCAACATATGCAACTATCTGCAATCTCATTCCAGAAAAAGATTACAATGTAACTGTTCTGGCTTACTCTCACTCTGGTAATGGGCCTGCTGCTTATTTTAGAGTCACCTTGCAAGGAATGAGGGCTACTGTCCCGCGCAATTTCCACAGCCTGGTGTTGTCTCCGACAGAGGTGAAGCTTTCCTGGGGCCCAGCTCCCAATGAGAACTCCAGAATATCTGGATATACAATTTACCAGGTCTCTACAAAACCAGAAAAGAAATACTCTGTGTCAGGGAAGAAGACTAGCTTTATAGTGACAAACCTTAGAGCATTCACCAAGTACCAGTTTCAAATTTCGTCCAGAAATAACCTGGGTTCAAGTCCAAGGAGTGAAGCCTTGGAAGTTCTTACATCTCAGAGCAGTCCTGGAATTGTGCAATATTTAAATGCAGAGCTGGTTGAGCCCAAATCAGCATGCATCTTGTTGACCTGGTCCAAACCAGAAATGACCAATGGCCCCATCAAGAGCTATATGTTAAGGATTTCAAAGTCTGCTGTTGGCGTGTATGATGAAGCACCTGAACCAGAGATAATTGAAGTTCCTGCATCTTCCAGTTCATATCTGTTCAAAAATCTGTTTGGCAGTACATCTTACTCTTTGACTGTGTGGGCAAGAAACGATGCTGGAAGGGGATTGGTGCATATTGAACCCTTTACTAAGAAGACTGAGCCTGCTCCTAAGGGTGCAGAACACCTTCAAGTTCGATATTCTGGACAAGAGGTTGATGGGCGTGGTGCTCGAGACTTTGAAAAAGCATTTATTCAAGCCGCCAGCAGTAAAGCTGGAATATCAGATCTTCGAATCGCTGCCGTTGAGCTCAAAGACGGTCGTTTTGTGGAGTTTGACCTCCTCCCTCCACTGAACAGTACAGGTGTTGCAATGCACGTGGCAAAAGCTGCTCTCGACAGTGGGTTTAGCACTAAAGGAAACAACATTTCAGCTGGCAGTTTAAACCGACTTTATATTCACGATGGAAGAGACAAAAGTACTCATTCAGTGGCAGGCCCAAATGCAGGGGCTCAAACAGGTTCAGAATCAAGAAGCAGCTCAATAAAGACTCCTCTTGCTATTGCTATTCCTTTGGTATTAATAGTGCTGGCAATGATGTTTGGCTTGATATTCTACTTCATGAAATACCGAACACTTCAGAAGCGTTTCATTAATGTGGAGAACTGCCAAGATGGGGATGAGATGGATGCCTTTTACGGTGGTGATATGCAAGGAGAATCACCTGATGTTATTTTCAGCGATCAAACCCGAAAGGGAAGGAAGATATACAAAGATTCAGAGAAGGTTCCCCTTGAAGACCACGATGAACTGGCGATGATTTGAAGGGTGTATCAATTTCCTCTCATTGTAAATTTCTTGTTTTGGGTCTTCTCAGAGAAAGGTGTTAAATTTGTAGTCTTGTCAACATGAGGGCCTGATATTTAGACTTGAGGATGATATTACCAGTTGCAACACAGAATAATAATTGTAATGTTGTTGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95209	Sortilin-related receptor OS=Oryctolagus cuniculus OX=9986 GN=SORL1 PE=1 SV=1
Q92673	Sortilin-related receptor OS=Homo sapiens OX=9606 GN=SORL1 PE=1 SV=2
P0DSP1	Sortilin-related receptor OS=Rattus norvegicus OX=10116 GN=Sorl1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00801 all species →	PKD	PKD domain	Domain	Interproscan
PF15901 all species →	Sortilin_C	Sortilin, neurotensin receptor 3, C-terminal	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF15902 all species →	Sortilin-Vps10	Sortilin, neurotensin receptor 3,	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR035986 all species →	Homologous_superfamily	PKD domain superfamily	Interproscan
IPR000601 all species →	Domain	PKD domain	Interproscan
IPR031777 all species →	Domain	Sortilin, C-terminal	Interproscan
IPR006581 all species →	Domain	VPS10	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR022409 all species →	Domain	PKD/Chitinase domain	Interproscan
IPR050310 all species →	Family	VPS10-related sortilin family receptors	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR031778 all species →	Domain	Sortilin, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12106 all species →	SORTILIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006892 all species →	Biological Process	post-Golgi vesicle-mediated transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g20562.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g20562.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

398.0Max TPM

293.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	293.16	397.97

Per sample · hover a bar for the full sample record

Show the sample table (39 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	397.97
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	381.25
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	352.37
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	340.21
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	339.74
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	333.41
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	332.68
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	328.39
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	325.15
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	323.33
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	322.63
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	320.46
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	319.94
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	315.90
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	314.12
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	312.29
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	307.55
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	303.27
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	296.57
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	293.09
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	285.30
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	283.26
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	283.03
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	280.55
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	280.50
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	279.39
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	276.63
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	274.33
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	273.76
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	264.23
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	262.99
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	261.99
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	256.52
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	252.46
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	231.16
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	230.39
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	217.52
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	204.33
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	174.57

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora digitifera tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

Direction	Partners	Most correlated partner	PCC
Positively correlated	33	g2577.t1	0.881245964234339
Negatively correlated	19	g29335.t1	-0.790673174462358

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora digitifera, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

Peak calls overlapping this gene

Assay	Sample	Peaks	Region

No called peak overlaps this gene in 1 available assay. Either the gene is not near an accessible or marked region in those samples, or it is not represented in the peak caller’s annotation.

Browse the full epigenomic landscape of this species: DNase-seq (DHS).

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	ready	open →
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →