Detailed information of g20577.t1.1 in Hydra viridissima

Genomic Location: :...
NR annotation: WP_013392618.1, ribonuclease R [Achromobacter xylosoxidans]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P44907Ribonuclease R OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=rnr PE=3 SV=1
P21499Ribonuclease R OS=Escherichia coli (strain K12) OX=83333 GN=rnr PE=1 SV=2
P30851Ribonuclease R OS=Shigella flexneri OX=623 GN=rnr PE=3 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08206OB_RNBRibonuclease B OB domainDomainInterproscan
PF17876CSD2Cold shock domainDomainInterproscan
PF00773RNBRNB domainDomainInterproscan
PF13673Acetyltransf_10Acetyltransferase (GNAT) domainDomainInterproscan
PF00575S1S1 RNA binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR001900DomainRibonuclease II/RInterproscan
IPR013223DomainRibonuclease B, N-terminal OB domainInterproscan
IPR011805FamilyRibonuclease RInterproscan
IPR050180FamilyRNR RibonucleaseInterproscan
IPR003029DomainS1 domainInterproscan
IPR011129DomainCold shock domainInterproscan
IPR022966Conserved_siteRibonuclease II/R, conserved siteInterproscan
IPR040476DomainRNase II/RNase R, cold shock domainInterproscan
IPR000182DomainGNAT domainInterproscan
IPR016181Homologous_superfamilyAcyl-CoA N-acyltransferaseInterproscan
IPR004476FamilyRibonuclease II/ribonuclease RInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23355RIBONUCLEASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004540Molecular FunctionRNA nuclease activityInterproscan
GO:0004518Molecular Functionnuclease activityInterproscan
GO:0000175Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0016747Molecular Functionacyltransferase activity, transferring groups other than amino-acyl groupsInterproscan
GO:0016070Biological ProcessRNA metabolic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12573rnr, vacB; ribonuclease REC:3.1.13.1
Transfer RNA biogenesisko03016deepkoala

TOP