Detailed information of g2064.t1.1 in Haliclystus octoradiatus

Genomic Location: :...
NR annotation: XP_044182112.1, uncharacterized protein LOC122962926 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q2KHU3Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1
Q96B26Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1
Q9D753Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01138RNase_PH3' exoribonuclease family, domain 1DomainInterproscan
PF13960DUF4218Domain of unknown function (DUF4218)DomainInterproscan
PF02992Transposase_21Transposase family tnp2FamilyInterproscan
PF03725RNase_PH_C3' exoribonuclease family, domain 2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027408Homologous_superfamilyPNPase/RNase PH domain superfamilyInterproscan
IPR001247DomainExoribonuclease, phosphorolytic domain 1Interproscan
IPR025452DomainDomain of unknown function DUF4218Interproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR004242FamilyTransposon, En/Spm-likeInterproscan
IPR036345Homologous_superfamilyExoribonuclease, PH domain 2 superfamilyInterproscan
IPR050590FamilyExosome complex component Rrp42 subfamilyInterproscan
IPR015847DomainExoribonuclease, phosphorolytic domain 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000176Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000177Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0000467Biological Processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0016075Biological ProcessrRNA catabolic processInterproscan
GO:0017091Molecular FunctionmRNA 3'-UTR AU-rich region bindingInterproscan
GO:0034427Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'Interproscan
GO:0034473Biological ProcessU1 snRNA 3'-end processingInterproscan
GO:0034475Biological ProcessU4 snRNA 3'-end processingInterproscan
GO:0034476Biological ProcessU5 snRNA 3'-end processingInterproscan
GO:0043928Biological Processobsolete exonucleolytic catabolism of deadenylated mRNAInterproscan
GO:0071028Biological Processnuclear mRNA surveillanceInterproscan
GO:0071035Biological Processnuclear polyadenylation-dependent rRNA catabolic processInterproscan
GO:0071038Biological ProcessTRAMP-dependent tRNA surveillance pathwayInterproscan
GO:0071042Biological Processnuclear polyadenylation-dependent mRNA catabolic processInterproscan

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