Gene detail

Detailed information of g20789.t1.1 in Astreopora myriophthalma

Genomic Location: :...
NR annotation: CAH3174549.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

g20789.t1

ATGGGAAAGCCAAAGAAGGGCAAGAAGAAAGATTTGGATTGGGAGGACGATGTTTTGAATGATCTTGAATCCTTGAAGGATGGTGAAccagacaaaaaagaaaactccgcCAGTAAAACAAAGAAAGGCaaaaaacagaagaagaagaaacagagtGAAAATGTAACAGTACcaacagaaagtgatgaaactAAGAGAACTAAAGCCGGTCGtaacaaagatgatgatgatgatgatgatgattatgatatTAAACAAAATGAGGGGAATGCATtagaaataaatggaaaagaatTTGAAGGTGAACCTGCAGTGCCAGCTGGTaaaaaatcaaaaaagaaaaagaaggggaaaaaagattTTGATTTGGATGAAGACTCAGGAGAGGAGGAAGAAGTTAAACCAGCTAATAAACGGGATGTTGTGGATCCGAACAAAGTTGAAACTGAGACAGAGCCTGAAGAAACGGGAGGTTTGAAGACAGCAGCGCAAAAACGAGCTGAGAAgaaggagagagagaaaaagaagaaagaagctGAAAAGGCCAAAGcaaaggcaaaagcaaaagctaaaGCTAACAAGGCAGAAAGTAAAGCAGAAGAAAGTAAAGCTGAGGCCAGCGTGGAGGATAAGATAGGTAAACAAAATGATGAGACAAAATCATCGGTTGGTAAGGAAAGGGAGGCTGGTGCTGCTTCAAAGCTGTCAGgAGATGTACAAGGTGCTGATACTGGCAAGCCAACTGTGaatgaacttgaaaacaaaggagAGGAGCAAGAGGGTGAGGAAGGTGCAGAAGATGGCGATGAGAAggacaagaagaaaaagaaaaagaagaaaggagaaaaggaagaaaagaaaacaaagaagccgAATAAAGCCCTGGTGAAAGAAATGCAACAACGACTTGAACAGCTTAGACTGGAAgaggaaaggaagaagaaagaagaggaagaaaaactGAGAGCTTTAGAAGAAGCAGAGAACAAGAGACTAGAGAAGCTACAAcgtgaacaagaaagaaaagacaagaaaaaacagaaattgaAGGAGAGGATTGCCAGACAGAAAAAGGAAGGGACATATCTTACAAAGGCTCAAAAGGAACAGCAAGCCAAAGCTCACGCCATGCTGGATGCCATGAAAAAACAAGGTTTGATTGAAATTCCGGGCCTCGATCAACCACAAGATGGAGTGAGGAGGCCTGTTCGGTACGGAACCAAAAAACCCAAGagacagcaacaacagcaagaacaacaaGTCCCACGAGAGACTGACAAAACAGATGAATCAGAAACCGTAATCAAGGAACCAACGGCTGAAGTGGAAGGTGACAAGAAATCGGATGATACTCAAACCAAGGCACCAGATAGCGTTAAGGTGAAGGTCAAAGAACCTTCCAAAACAGCTGCAGAAAGCGAAGAAGAGTCATCGGAGAGTGAAGACAACGAAGAGGAGGAAAGTGAATCAGAAGAGgacgaagatgaagatgaaagcGAGAGTGAGGAGGGgtctgaagaagaagaagagaggaaaacagaaacAGTGCGCGATAGAATAGTGAAAAGACGTGTAAGAGCAGAAGCCAACCGAACTACAGACAAACTGCGTTCGCCGGTCATCTGCGTGCTGGGTCATGTAGATACcggaaaaacaaagattttagACAAGATTCGTCATACTCACGTGCAAGATGGAGAGGCTGGTGGCATCACTCAACAGATTGGTGCAACTATGGTCCCAGTCGACGCCATAAGAGAACAGACCAAGATGATCAAGGACTTCCAAGATTTTGACATCAAATTACCAGGTCTTCTAATCATAGATACTCCTGGACACGAATCGTTCAGCAATCTGCGATCCCGAGGTTCGTCCCTGTGTGATATGGCAATTTTGGTtgtggatattatgcatggatTAGAACCGCAGACTATTGAGTCTATCAATCtcctcaaaaaaagaaagactccTTTTGTAGTGGCCTTGAATAAGGTTGACAGGCTATTCGAGTGGAAGCGAGGTCCGAATTCGGCTATCGTGGACACcatcaagaaacaaaagaaaaataccaaGCAAGAGTTTGATGAGCGAGTACAGGTCGTCTTAAAAGAGTTTGCAGAACAGGTCAGTTTCTCAGGTGGAAAAAGCTCGTGGTGCAATCTGCGGTCCCGAGGTTCGTCCCTGTGTGATATGGCAATTTTGGTtgtggatattatgcatggatTAGAACCGCAGACTATTGAGTCTATCAATCtcctcaaaaaaagaaagactccTTTTGTAGTGGCCTTGAATAAGGTTGACAGGCTATTCGAGTGGAAGCGAGGTCCGAATTCGGCTATCGTGGACACcatcaagaaacaaaagaaaaataccaaGCAAGAGTTTGATGAGCGAGTACAGGTCGTCTTAAAAGAGTTTGCAGAACAGTCCATGAATGCAGCCCTTTTCTACAACAATCCAGACCCAAGATCTTACGTTTCGCTAGTACCCACGTCTGCTCACACGGGAGATGGGATGGGGGATCTTATCTCCCAAGTGGTGCGCCTGACGCAGACAAGGCTCACCCAGCGGCTGTCGTTCTCCGAGGAATTACAGAGCATGGTGTTGGAGGTCAAAGCCTTACCAGGCCTTGGTACAACGATAGATGTGATTCTGGTGAACGGCAAGCTAAAGGAAGGCGACACTATAGTCGTGGCAGGAATCGAGGGCCCTATTGTGACGCAGATAAGGGCCCTTCTCACGCCTCAGCCCCTAAAGGAACTGAGGGTCAAAAACCAGTACATCAATCACAAAGAGCTTCCTGGCGCTCAGGGAATCAAGATCGCGGCGAAGGACCTGGAAAAAGCCTTAGCTGGCATACCTCTATTTGTAGCACAGCAAGCGGACGAGGTGGACTACCTTAAGGAAGAAGTGTCCAACATTCTGAACGACACTCTCCAGTCTATCAAGCTGTCTGACCGAGGTGTGTATGTACAAGCTTCTACCCTGGGATCGCTAGAGGCTTTACTGGAGTTCCTGCGCACGTCCAAGATTCCTTACTCTGGAGTTAATATTGGACCAGTTCACAAAAAGGACATCATGAAGTGTTCTACCATGTTGGAACATGACGgacaGTATGCTGTTATCTTGGCTTTTGACGTACGTATAGAGAGAGATGCGCAGGAAATGGCCGACAGTTTAGGAGTGAAGATATTTTCTGCCGACATAATTTACCACTTGTTTGACAAGTTCACAGCTTATCGGGAGGAACTCAAGCAGAAGAAGCGCGAAGAATTCAAACACATTGCGGTGTTTCCATGCAAGCTTCGTGTTATGCCCCAGCACATATTCAATTCTCGAGGCCCTATTGTCGTTGGTGTGTCTGTGGAGGCTGGTGTAGTAAAGGAGGGAACACCGATATCAGTTCCAAGTCAGGAGTTTCTAGACATCGGCGTTGTAACCGGGATTGAAGCAAACCACAAACAACTCCCTGAGGCTCGTAAAGGAATGGAAGTTTGCGTCAAGATCGAATCCCCACCCGGAGAAGCTCCGAAAATGTACGGTCGGCATTTTGATCACACCGACCTCCTCGTCAGCAAGaTCAGCCGGGAGTCTATCGATGCAGTGAAGGAATATTTCAGAGAAGATTTGCAGAAAGCTGATTGGCAGCTGAtgattgaattgaagaaattatttgaaataatataa

Transcript

g20789.t1

Protein

Uniprot

Uniprot term	Description
Q05D44	Eukaryotic translation initiation factor 5B OS=Mus musculus OX=10090 GN=Eif5b PE=1 SV=2
B2GUV7	Eukaryotic translation initiation factor 5B OS=Rattus norvegicus OX=10116 GN=Eif5b PE=1 SV=1
O60841	Eukaryotic translation initiation factor 5B OS=Homo sapiens OX=9606 GN=EIF5B PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF11987	IF-2	Translation-initiation factor 2	Domain	Interproscan
PF14578	GTP_EFTU_D4	Elongation factor Tu domain 4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR015760	Family	Translation initiation factor IF- 2	Interproscan
IPR036925	Homologous_superfamily	Translation initiation factor IF-2, domain 3 superfamily	Interproscan
IPR023115	Domain	Translation initiation factor IF- 2, domain 3	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR029459	Domain	Elongation factor Tu-type domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43381	TRANSLATION INITIATION FACTOR IF-2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03243	EIF5B; translation initiation factor 5B	-	Translation factors	ko03012	deepkoala