Detailed information of g208.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_002167188.2, metastasis-associated protein MTA3 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q62599Metastasis-associated protein MTA1 OS=Rattus norvegicus OX=10116 GN=Mta1 PE=1 SV=1
Q13330Metastasis-associated protein MTA1 OS=Homo sapiens OX=9606 GN=MTA1 PE=1 SV=2
Q8K4B0Metastasis-associated protein MTA1 OS=Mus musculus OX=10090 GN=Mta1 PE=1 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2
Transcription Factors FamilyETS
Transcription Factors FamilyMYB

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07679I-setImmunoglobulin I-set domainDomainInterproscan
PF11707Npa1Ribosome 60S biogenesis N-terminalFamilyInterproscan
PF16201NopRA1Nucleolar pre-ribosomal-associated protein 1FamilyInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF01426BAHBAH domainDomainInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF01448ELM2ELM2 domainFamilyInterproscan
PF17226MTA_R1MTA R1 domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00178EtsEts-domainDomainInterproscan
PF00732GMC_oxred_NGMC oxidoreductaseDomainInterproscan
PF05199GMC_oxred_CGMC oxidoreductaseDomainInterproscan
PF08156NOP5NTNOP5NT (NUC127) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR051170FamilyNeural and epithelial cell adhesion domain-containing proteinInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR013098DomainImmunoglobulin I-setInterproscan
IPR021714DomainNucleolar pre-ribosomal-associated protein 1, N-terminalInterproscan
IPR032436DomainNucleolar pre-ribosomal-associated protein 1, C-terminal domainInterproscan
IPR039844FamilyNucleolar pre-ribosomal-associated protein 1Interproscan
IPR052510FamilyOomycete RxLR EffectorInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR000949DomainELM2 domainInterproscan
IPR043151Homologous_superfamilyBromo adjacent homology (BAH) domain superfamilyInterproscan
IPR017884DomainSANT domainInterproscan
IPR001025DomainBromo adjacent homology (BAH) domainInterproscan
IPR040138FamilyMesoderm induction early response protein/metastasis-associated proteinInterproscan
IPR036265Homologous_superfamilyHIT-like superfamilyInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR001005DomainSANT/Myb domainInterproscan
IPR035170DomainMetastasis-associated protein MTA1, R1 domainInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR000418DomainEts domainInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR046328FamilyETS familyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR000172DomainGlucose-methanol-choline oxidoreductase, N-terminalInterproscan
IPR012132FamilyGlucose-methanol-choline oxidoreductaseInterproscan
IPR007867DomainGlucose-methanol-choline oxidoreductase, C-terminalInterproscan
IPR011533FamilyOxygen-dependent choline dehydrogenaseInterproscan
IPR036188Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan
IPR045056FamilyNucleolar protein Nop56/Nop58Interproscan
IPR012974DomainNucleolar protein 58/56, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12231CTX-RELATED TYPE I TRANSMEMBRANE PROTEINInterproscan
PTHR13500NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1Interproscan
PTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR10865METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEINInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR11849ETSInterproscan
PTHR11552GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASEInterproscan
PTHR10894NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0043005Cellular Componentneuron projectionInterproscan
GO:0000463Biological Processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000466Biological Processmaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0000122Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0003713Molecular Functiontranscription coactivator activityInterproscan
GO:0003714Molecular Functiontranscription corepressor activityInterproscan
GO:0005654Cellular ComponentnucleoplasmInterproscan
GO:0016575Biological Processobsolete histone deacetylationInterproscan
GO:0016581Cellular ComponentNuRD complexInterproscan
GO:0042826Molecular Functionhistone deacetylase bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0016614Molecular Functionoxidoreductase activity, acting on CH-OH group of donorsInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0008812Molecular Functioncholine dehydrogenase activityInterproscan
GO:0019285Biological Processglycine betaine biosynthetic process from cholineInterproscan
GO:0005743Cellular Componentmitochondrial inner membraneInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0030515Molecular FunctionsnoRNA bindingInterproscan
GO:0031428Cellular Componentbox C/D methylation guide snoRNP complexInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K00108betA, CHDH; choline dehydrogenaseEC:1.1.99.1
Glycine, serine and threonine metabolismko00260deepkoala

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