Gene detail

Detailed information of g2090.t1 in Montipora capitata

Genomic Location: Sc0000030:318616...351741
NR annotation: XP_029212868.2, LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2090.t1

atgttttggaaattcgatttgcatcctacttctgctatagatactatgttgacgagagaggactgtactttgggcgaaatactggacgaagatgatgtgctccaagaaacaaaatcacaaaataggaagctgattgacttttttcttaggccagagatcttagaggaactagtggacctagttttacaatcaccagatgaaagcaaagatgactgtgtgaaatataaacaccccaatactgcttgtgaagtgttaactgctgatgtttatgccatcattgacaaattaacaaacaatgaggatttactgaataaaatctggtcatttatggaggctgagcctccacttaatcccctactagcaagtttcttcagtaaagttatgggagttcttataagtaggaagacatctttgatgttagagtaccttaaaagtaaagaagattttgtagacttaattgtcaaacatcttggaacatcagcagtgatggatttactacttcgattgataacaagcgttgaatcacctcaactgcgccaagatctgcttgagtggttgaataatcaaaagcttattgaaagtttggtctctctcattgatcctgaaatcgatgaagatagaagtagcaatgctgctcaaagcctttgtgatgtgataagactaagtagagaccacatgtcacaacttcaagaaaatgctgatcaagatcctttgctagatgctgttcagaggagagaaacagtatcagagttgttggatcacatgttgcatgatgctcagctgcatccagatgttgctctggttaacggaatctctgttttgctcacactcctagaagtcaggaaaggaagtggcgagggggaggaaccaatgacggccttggacgccgaaagacttgcgcaaggtgtcagtgccactttggcagctttgactccaaggcttaaagacttccatcagcttctagtgaacccaccaccaatgaagccaatgttgacaacagtaggaactttagacccacctcttgggaatgctcgacttcaagcctcgaagctgattgcggctatattggcaaccaatagtgatacaataaatgctgaattagctaacctaggaaccttacaagttttatgggagttatttttcaagtattcatggaataatttcctccacactcaagtggagaagtgtgttacaacagttttaaacaatcccccaacggaggaagatggagagcattgcactcctttagtcgatgttttgtttaaagattgtcaagttattcaaagaattcttcaggagtgggatgatcttgaatcagagacaagtccggggaaccataggaagggatacatgggtcatttgactaatgttgcgaacaatattgtgcagagtgtggagaaaggcaaaaacaaggctgctcttgaaactgtatttactgacttaccagagaaagttcgagaaaagtggaatacatttgtgacaggcaaattgacagatgtcaacaaacagaacatgtctgaactggctggtcatcattttcagtcctcctcagatgatgaggatgatttcaaaccgatgtcatttctgcacactgagagctcactgcagcaggcattttcacgctaccaaatgcaacagataacaacagaatttatggacacatttggccttgatgaagaagaattccaagatcgtgatgaatcaataacgggaccctttgacagaattggtgatgtcagcttttcaatagatgctcacgaagataatccaagcactgcattgtttgaagcttgttgtaatgaaaaaattcaacagtttgatgacagtgggagtgatgaggaggatatttgggaagaaaaggaacttacattctcatccatagtagaagcaagacagagtgccttgtcccctcagggaggaagtgacagtgaaagtagcgatagcgaagatgatttagaaccacctggtccccagacatctgatatccagtttcaaagcgccagcagtccacagggatcacctgcaaaacaggccgctcgtcctgctgctcctgccatggctgcagacagtaaaatggacgtagatccagctgatgcatggtcaattgcatttgaacctggcgatgtggcggctgtagatgaggcagtctctatggatgcatcagatgtgggatggggagatacagcatcagcaacagcagatactggatgggcaacatttgacagctttactgatattagaatggctccaaccagtgaacaatccaatgatgtagtagattcgcctgttgcaatggagacagagagtcccttaccttcttcttcacaagcaggggctgcctatattgttcaacaagaaggaagtccggacaaccaaggtgaaataagaacacaaggtctggtgtcgagtacagaggatcttggtgttacgcgggagccaaatcaagataatatacctgcagagtccacagtatcttctccagcagtggacagagcagctctctacaggtgcgagggtcagtccgcttttaattcagcacctctagcgacgaatgatagtgatgatgatatctcagacgaggaaagcgccggagtcagatgtgaagaggtattttccaggttggctgatgaagggacaacggaaggagagttgaaccccaaaagtgaagtactgcccctgaataatgtacacgaggggaaaatgacaaatacaaaggtggacaatggaccggtagagttaacaaacaccgaaatgaaccaggggttaataaagaaaagtaaaatggatcaagaaacacctgggtaa

Transcript

g2090.t1

ATGTTTTGGAAATTCGATTTGCATCCTACTTCTGCTATAGATACTATGTTGACGAGAGAGGACTGTACTTTGGGCGAAATACTGGACGAAGATGATGTGCTCCAAGaaacaaaatcacaaaataGGAAGCTGATTGACTTTTTTCTTAGGCCAGAGATCTTAGAGGAACTAGTGGACCTAGTTTTACAATCACCAGATGAAAGCAAAGATGACTGTGTGAAATATAAACACCCCAATACTGCTTGTGAAGTGTTAACTGCTGATGTTTATGCCATCATTGACAAATTAACAAACAATGAGGATTTACTGAATAAAATCTGGTCATTTATGGAGGCTGAGCCTCCACTTAATCCCCTACTAGCAAGtttcttcagTAAAGTTATGGGAGTTCTTATAAGTAGGAAGACATCTTTGatGTTAGAGTACCTTAAAAGTAAAGAAGATTTTGTAGACTTAATTGTCAAACATCTTGGAACATCAGCAGTGATGGATTTACTACTTCGATTGATAACAAGCGTTGAATCACCTCAACTGCGCCAAGATCTGCTTGAGTGGTTGAATAATCAAAAGCTTATTGAAAGTTTGGTCTCTCTCATTGATCCTGAAATCGATGAAGATAGAAGTAGCAATGCTGCTCAAAGCCTTTGTGATGTGATAAGACTAAGTAGAGACCACATGTCACAACTTCAAGAAAATGCTGATCAAGATCCTTTGCTAGATGCTGTTCAGAGGAGAGAAACAGTATCAGAGTTGTTGGATCACATGTTGCATGATGCTCAGCTGCATCCAGATGTTGCTCTGGTTAACGGAATCTCTGTTTTGCTCACACTCCTAGAAGTCAGGAAAGGAAgtGGCGAGGGGGAGGAACCAATGACGGCCTTGGACGCCGAAAGACTTGCGCAAGGTGTCAGTGCCACTTTGGCAGCTTTGACTCCAAGGCTTAAAGACTTCCATCAGCTTCTAGTGAACCCACCACCAATGAAGCCAATGTTGACAACAGTAGGAACTTTAGACCCACCTCTTGGGAATGCTCGACTTCAAGCCTCGAAGCTGATTGCGGCTATATTGGCAACCAATAGTGATACAATAAATGCTGAATTAGCTAACCTAGGAACCTTACAAGTTTTATGGGAGTTATTTTTCAAGTATTCATGGAATAATTTCCTCCACACTCAAGTGGAGAAGTGTGTTACAACAGTTTTAAACAATCCCCCAACGGAGGAAGATGGAGAGCATTGCACTCCTTTAGTCGATGTTTTGTTTAAAGATTGTCAAGTTATTCAAAGAATTCTTCAGGAGTGGGATGATCTTGAATCAGAGACAAGTCCGGGGAACCATAGGAAGGGATACATGGGTCATTTGACTAATGTTGCGAACAATATTGTGCAGAGTGTGGAGAAAGGCAAAAACAAGGCTGCTCTTGAAACTGTATTTACTGACTTACCAGAGAAAGTTCGAGAAAAGTGGAATACATTTGTGACAGGCAAATTGACAGATGTCAACAAACAGAACATGTCTGAACTGGCTGGTCATCATTTTCAGTCCTCCTCAGATGATGAGGATGATTTCAAACCGATGTCATTTCTGCACACTGAGAGCTCACTGCAGCAGGCATTTTCACGCTACCAAATGCAACAGATAACAACAGAATTTATGGACACATTTGGCCTTGATGAAGAAGAATTCCAAGATCGTGATGAATCAATAACGGGACCCTTTGACAGAATTGGTGATGTCAGCTTTTCAATAGATGCTCACGAAGATAATCCAAGCACTGCATTGTTTGAAGCTTGTTGTAATGAAAAAATTCAACAGTTTGATGACAGTGGGAGTGATGAGGAGGATATTTGGGAAGAAAAGGAACTTACATTCTCATCCATAGTAGAAGCAAGACAGAGTGCCTTGTCCCCTCAGGGAGGAAGTGACAGTGAAAGTAGCGATAGCGAAGATGATTTAGAACCACCTGGTCCCCAGACATCTGATATCCAGTTTCAAAGCGCCAGCAGTCCACAGGGATCACCTGCAAAACAGGCCGCTCGTCCTGCTGCTCCTGCCATGGCTGCAGACAGTAAAATGGACGTAGATCCAGCTGATGCATGGTCAATTGCATTTGAACCTGGCGATGTGGCGGCTGTAGATGAGGCAGTCTCTATGGATGCATCAGATGTGGGATGGGGAGATACAGCATCAGCAACAGCAGATACTGGATGGGCAACATTTGACAGCTTTACTGATATTAGAATGGCTCCAACCAGTGAACAATCCAATGATGTAGTAGATTCGCCTGTTGCAATGGAGACAGAGAGTCCCTTACCTTCTTCTTCACAAGCAGGGGCTGCCTATATTGTTCAACAAGAAGGAAGTCCGGACAACCAAGGTGAAATAAGAACACAAGGTCTGGTGTCGAGTACAGAGGATCTTGGTGTTACGCGGGAGCCAAATCAAGATAATATACCTGCAGAGTCCACAGTATCTTCTCCAGCAGTGGACAGAGCAGCTCTCTACAGGTGCGAGGGTCAGTCCGCTTTTAATTCAGCACCTCTAGCGACGaatgatagtgatgatgataTCTCAGACGAGGAAAGCGCCGGAGTCAGATGTGAAGAGGTATTTTCCAGGTTGGCTGATGAAGGGACAACGGAAGGAGAGTTGAACCCCAAAAGTGAAGTACTGCCCCTGAATAATGTACACGAGGGGAAAATGACAAATACAAAGGTGGACAATGGACCGGTAGAGTTAACAAACACCGAAATGAACCAGGGGTtaataaagaaaagtaaaatGGATCAAGAAACACCTGGGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5H9R7	Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Homo sapiens OX=9606 GN=PPP6R3 PE=1 SV=2
Q5F471	Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Gallus gallus OX=9031 GN=PPP6R3 PE=2 SV=1
Q922D4	Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Mus musculus OX=10090 GN=Ppp6r3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004058 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04499 all species →	SAPS	SIT4 phosphatase-associated protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007587 all species →	Family	SIT4 phosphatase-associated protein family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12634 all species →	SIT4 YEAST -ASSOCIATING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019903 all species →	Molecular Function	protein phosphatase binding	Interproscan
GO:0043666 all species →	Biological Process	obsolete regulation of phosphoprotein phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0019888 all species →	Molecular Function	protein phosphatase regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g2090.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2090.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

370.2Max TPM

153.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	148.08	360.69
whole organisms · low pH treatment	15	15	161.66	359.54
whole organisms · extra low pH treatment pH treatment	12	12	152.86	370.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	360.69
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	356.62
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	347.73
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	180.46
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	178.11
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	174.54
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	150.32
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	137.69
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	126.78
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	116.88
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	112.20
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	107.94
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	107.85
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	102.19
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	91.41
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	89.67
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	81.39
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	80.51
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	70.96
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	69.78
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	66.02
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	359.54
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	359.23
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	349.78
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	188.41
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	183.31
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	170.66
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	122.07
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	119.12
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	107.47
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	88.31
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	85.40
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	83.62
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	78.77
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	66.14
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	63.12
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	370.20
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	337.37
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	187.80
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	182.48
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	139.24
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	105.35
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	100.62
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	100.32
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	99.67
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	78.29
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	70.74
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	62.26

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.