Gene detail

Detailed information of g20926.t1 in Montipora capitata

Genomic Location: Sc0001287:901...37565
NR annotation: XP_044165837.1, uncharacterized protein LOC122949848 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

g20926.t1

atgactgtcatgcagaaaggtgatgaggcaactgatcggctgtggtatcactggcaacggaggcatccgtctaccctccgtcagctcatgaaagaacccaaacctgcacgtaaactgctgagagagtggaagcgcataagggaagagcatggcgtcctgtaccgtgttgttcagataaacggtcaaggtgcacggcagctgatactccctggttccttaaagagcaacgtactgaaatccatccacgacgatctaggtcatcaggcagtagagaaaacaacggcgcttgcaaggagcagattctattggcctgggatgatggctgatgttgctgactactgtcggacatgtggacgttgtactctggccaaagcagggaagaagcttcatcctaccatgagttccctgacagccaccaggccattggagattttggcagttgatttcactctcctagagagaagtacaggaggcatagggaacgtgcttgtccttaccgatgttttcacgaaatatacgcaagctattcccacaaaggatcagaaggcgaccacagtagctcgagtcctagtgaaagagtggattgtaaggtttggggtacctaaaaggattcacagcgaccaagggcgcaatttcgagagcaaggtgattcaggaactttgtaagatctatggcatctctaagagttgcacatccccgtacgatccagagggtaacggtcaatgtgaacgcttcagtagaaccatgcataaccgtctgcgtactttgccttcagagaagaaacgtaagtggccagaatttcttccagaacttgtgtttgcatacaactgtaccccacactcaactactggctactcgccctactacttgttcttcggcagggagccgacacttccagtggatcatctaattgggtcagcaagccatactgaagagtgtaaagaatggatcactgaacaccaggagcgtttagagcaggctttcagactagcctcagccagaacaccgagggaggcactgcgacgccaaaccaggaacaaccttaaagccaccgataccagcattcccgtagggtccagggtgttccttaagaatcgtgtccaggggcgcagttacgattttgactttgttgatgaattgcaagaggatcaggtctgcccgatctgtaaacgagcaatgcgggatcctgtgcagatcgttgaatgcggacatcaatgttgcgaatattgtttaatgatgtcgcagagggatgatggtggtctgcattgtccattggatcgcaagcgccttcctgataataatgcgttctttgaagatgtggcatgtaaaagaaagatctgttcacttcgagtcaaatgtaaacagcatcgcagagggtgtaaatggatgggagaaattcgtaactacctggatcactttgaaatttgccagtttgaagaccaagtttgcgaggactgcagcatgagtattcaaaggcaatttatggaagatcacaagaataatggttgtgaagaaagaactgtcccatgcaaatactgtctgaatgtgtttccccagtgttatttacaggagcatgtggaaaaagaatgtcattatttcccaaacaagtgccctcaagaatgtggtagagagagaattcctcgtaaggaggtcgagtctcatcttgccaatgaatgtcccaggacagtggtatcctgtccttactcagtgattggctgtacctttgaggacatgcgtagtgctctggaacttcacattcaagattccactgaaaagcaccagagacaggcattgagtcttgcaagtaaaaatgcggagttggagaatgaagtaagggagctgaaaaaggaagttgaatttagcaatgaagcacaaaataagcttgcatcagaaaatctggaactgaggaatgcatattcagaccttgcacaaaacagtgatctggccttcaagtcaataatgacccggctatcggctgttgaggagagtcagaagcataagcttgaaagtaaatgcaaggaaactgaggacatgcgttgtaaactggaatctcaccttcaggatgtcaaagagcagctgagcaatgttacattgaaattcactaaggccgagtacaaaattgaagagctggaaaggaataatagcatgatcattagggtacaatctaagcatatccttaaaccgttcatgggagtctttctcaaggcggctattagccgatga

Transcript

g20926.t1

ATGACTGTCATGCAGAAAGGTGATGAGGCAACTGATCGGCTGTGGTATCACTGGCAACGGAGGCATCCGTCTACCCTCCGTCAGCTCATGAAAGAACCCAAACCTGCACGTAAACTGCTGAGAGAGTGGAAGCGCATAAGGGAAGAGCATGGCGTCCTGTACCGTGTTGTTCAGATAAACGGTCAAGGTGCACGGCAGCTGATACTCCCTGGTTCCTTAAAGAGCAACGTACTGAAATCCATCCACGACGATCTAGGTCATCAGGCAGTAGAGAAAACAACGGCGCTTGCAAGGAGCAGATTCTATTGGCCTGGGATGATGGCTGATGTTGCTGACTACTGTCGGACATGTGGACGTTGTACTCTGGCCAAAGCAGGGAAGAAGCTTCATCCTACCATGAGTTCCCTGACAGCCACCAGGCCATTGGAGATTTTGGCAGTTGATTTCACTCTCCTAGAGAGAAGTACAGGAGGCATAGGGAACGTGCTTGTCCTTACCGATGTTTTCACGAAATATACGCAAGCTATTCCCACAAAGGATCAGAAGGCGACCACAGTAGCTCGAGTCCTAGTGAAAGAGTGGATTGTAAGGTTTGGGGTACCTAAAAGGATTCACAGCGACCAAGGGCGCAATTTCGAGAGCAAGGTGATTCAGGAACTTTGTAAGATCTATGGCATCTCTAAGAGTTGCACATCCCCGTACGATCCAGAGGGTAACGGTCAATGTGAACGCTTCAGTAGAACCATGCATAACCGTCTGCGTACTTTGCCTTCAGAGAAGAAACGTAAGTGGCCAGAATTTCTTCCAGAACTTGTGTTTGCATACAACTGTACCCCACACTCAACTACTGGCTACTCGCCCTACTACTTGTTCTTCGGCAGGGAGCCGACACTTCCAGTGGATCATCTAATTGGGTCAGCAAGCCATACTGAAGAGTGTAAAGAATGGATCACTGAACACCAGGAGCGTTTAGAGCAGGCTTTCAGACTAGCCTCAGCCAGAACACCGAGGGAGGCACTGCGACGCCAAACCAGGAACAACCTTAAAGCCACCGATACCAGCATTCCCGTAGGGTCCAGGGTGTTCCTTAAGAATCGTGTCCAGGGGCGCAGTTACGATTTTGACTTTGTTGATGAATTGCAAGAGGATCAGGTCTGCCCGATCTGTAAACGAGCAATGCGGGATCCTGTGCAGATCGTTGAATGCGGACATCAATGTTGCGAATATTGTTTAATGATGTCGCAGAGGGATGATGGTGGTCTGCATTGTCCATTGGATCGCAAGCGCCTTCCTGATAATAATGCGttctttgaAGATGTGGCATGTAAAAGAAAGATCTGTTCACTTCGAGTCAAATGTAAACAGCATCGCAGAGGGTGTAAATGGATGGGAGAAATTCGTAACTACCTGGATCACTTTGAAATTTGCCAGTTTGAAGACCAAGTTTGCGAGGACTGCAGCATGAGTATTCAAAGGCAATTTATGGAAGATCACAAGAATAATGGTTGTGAAGAAAGAACTGTCCCATGCAAATACTGTCTGAATGTGTTTCCCCAGTGTTATTTACAGGAGCATGTGGAAAAAGAATGTCATTATTTCCCAAACAAGTGCCCTCAAGAATGTGGTAGAGAGAGAATTCCTCGTAAGGAGGTCGAGTCTCATCTTGCCAATGAATGTCCCAGGACAGTGGTATCCTGTCcttactcagtgattggctgTACCTTTGAGGACATGCGTAGTGCTCTGGAACTTCACATTCAAGATTCCACTGAAAAGCACCAGAGACAGGCATTGAGTCTTGCAAGTAAAAATGCGGAGTTGGAGAATGAAGTAAGGGAGCTGAAAAAGGAAGTTGAATTTAgcaatgaagcacaaaataagCTTGCATCAGAAAATCTGGAACTGAGGAATGCATATTCAGACCTTGCACAAAACAGTGATCTGGCCTTCAAGTCAATAATGACCCGGCTATCGGCTGTTGAGGAGAGTCAGAAGCATAAGCTTGAAAGTAAATGCAAGGAAACTGAGGACATGCGTTGTAAACTGGAATCTCACCTTCAGGATGTCAAAGAGCAGCTGAGCAATGTTACATTGAAATTCACTAAGGCCGAGTACAAAATTGAAGAGCTGGAAAGGAATAATAGCATGATCATTAGGGTACAATCTAAGCATATCCTTAAACCGTTCATGGGAGTCTTTCTCAAGGCGGCTATTAGCCGATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR052160	Family	Gypsy Retrotransposon Integrase-like	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47266	ENDONUCLEASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan