Gene detail

Detailed information of g20987.t1 in Acropora digitifera

Genomic Location: chr10Alt:786505...791151
NR annotation: XP_044181449.1, E3 ubiquitin-protein ligase SHPRH-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g20987.t1

ATGTCAAGTCGCAAAAGAAAGCAGAAATTTCCGGAAAAGAAAAGCGAGGAAAAACGAGCGAAAATGACTTGGAGTATGACAGACCTTGCGAAATCAGTGACTGATGAATCTCGAATCCAACAGTTCATTCTGCCCCCGCTTCAACAGGAAAAGGCAGCCACCAGAAGGAGGAGGATTGAATCGACAACAAGTACTGGTGTACCGGCAAACTTGGAATTAAAGCTCGAGAATACTTACTCTAAGCTGAACATCTGTCAGCTTGGTTGCTTCAGCATTTGCTTATGTACCAGCAAAGAGCAAGAGGATGAAATGCGAATGAATGGGAGCAATGTTTCATCAGCACATTTAGTGAGTGAATGGAATTTTGATCACCGTAATTATGTAATTGTCAGGCTAGCTTTTGAGACACCGATTTTATCAGCCACATCACCGGAGATCAGAGACTGTTGTGATCAAGGTAGTACAAGCCAGGATGAAGTTGACATTTTGAAACAAGTGTCTTTCAAAGCCACAGTCCCAAATGTGAAACATGATCAAATAGAAGCTATAGTTTATCTCCAAAACAAAGGAGTTATCTCTTTAGTTTTAAAACCAGAGCAAGGCATTTTAAAAGACAATTGGGAAGTGGTAGTGTGCTTGAATAAGAGTGGTCTTTGCACGTTATCTTTTGCAAGTGTGGAACCAACCTCAAGGAAGATAGATAAGATGATGAAGATCTTGATGTCTTGGTTTTATGACTCTCTTGTTGACAATGACCTGATTGAGGACATTGAGAGAGGTTTGACAGCTGATAAAGGTTTTACCTGGTTGTTTGATTCCATCAAAGCTGTCCAAAAAAAGGCTTCCAGTGCTGCTGCAAACACAAATAAACAATACTCTGTCAGCAACAGGAAGAATGAAGATATAGTTGTACCTGATGTCCAACATCCTGATTTAAAACCTGTATTGAGAGGTTATCAAAGAAAAGCCGTAGAGTGGATGTTGAGGAGAGAGTATGGCTGTTGTCTTGGAGAGCACATTGCTGATGATAACTTCACTCACCCATTATGGCGGGAAATTCGTACTTTGGATGGGAAGCTTGTATATTTTAACCCTCACACTGGAAGGGTTACAAAAAAATGCTTTCCACCTCCACTGTTACCTCTTGGAGGGATCTTGGCCGATGAAATGGGACTTGGAAAGACAGTGGAAGTCATAGCATGTATTCTGTGTCACCCTAAACCCACCTCCGAGTCCAAATTGCCGGTAGACGCTGAGAATGGAACTGCCCTCCAGAAATTAAGCAACCCACAAACATTAGTAGGAGAAAGTCTTCTTTCATCTTCCAAAATGAGACTTGAAAAGCCCACCACTGCTCAGATTGATCCATCAAGACAGCAACCTTTGTCAAACAGCTGTACAGTGAACCCAGAGCACAAGTCAAAAAGTGCATGCAATGGTGCAGCAATGCATTCAAGCCTTGCTTCTGAATCTGTGAATGCAAACAAAGCTCGTGAACAAAAACTACTCAAAACTAATGGCAGCTCTAAACTTACAGAATGTGTTGCTTCTTCCAAGAGGACAAACTGTGTAGCAACTCACTCAGATATGAAATTTCTGAATCATGATCAAAACTCTGATGTAAAAGAATGCCTCAATGTCGAGTTTACATCACCATGTGAAAGCCAAATAAGACAAAATTTACATGCTCCTCAAGTTAAACTGGACCAGTGTTGTGACGTTAGTGACCAGCAAGGTTCAAATGCAGCATCGTCAGTGTGCTTAGACAATGAAAATTTTGAAGTGTTCAATAAAGAGAAGGATGGTGCAGTCCTTCCTCAAGCTGTCATCTCATCTTGTGAAAGCTTAGAGTCTTCAAGGGATTTCTTTCAATGCCATTCTCATGACAAAGGAAGATTACAACCTGAAGTTATGATTACAGAGCACAGTCACAACCCCAATACCAATCGCACAAAAGATACCGTTCCCTCAAAAAACAATCAAGATTTTGCAGATGATTCATCTCTTTCATCTGGTTTGGCATTAAAGAAAACTGCCACCATAAAATGCCAGTGTGTCTGTGGTGTGACTTCCGCAAATTTCAGTGACAAGCTACTGAATTGTTGTAAATGCCAAGCTGTTTTCCATGCTAGGTGTCTTACATATGAATGTCCAAAGGAGTTTATATGTCCACCCTGTGCTTTGAGACAGCCTACAGTTCCATCTGGTGCAACCCTAATCATTTCTCCAGCCCCCATTGCGCAGCAGTGGATAGATGAAATCATTAGGCACACACAACCATCATCGCTCAAACTTCTGGTATATAAAGGTGTTGCAACATCAGGTTTTATTTTACCTGAAGTCCTGGCAGATCATGATGTCATCTTGACAACATACACCACCCTGAGATCAGACTTTTATCATATAGGCCAAGGAAAGTTAATGTTATTTTTTCTTTTTGTGGAATCTGGAATTATTCATTAA

Transcript

chr10Alt.g20987.t1

ACGTAAGTTGTGAGCTCGATTTGGGCGGCAAAGGTAATATATAAACATCAACGCATCGAAGATGTCAAGTCGCAAAAGAAAGCAGAAATTTCCGGAAAAGAAAAGCGAGGAAAAACGAGCGAAAATGACTTGGAGTATGACAGACCTTGCGAAATCAGTGACTGATGAATCTCGAATCCAACAGTTCATTCTGCCCCCGCTTCAACAGGAAAAGGCAGCCACCAGAAGGAGGAGGATTGAATCGACAACAAGTACTGGTGTACCGGCAAACTTGGAATTAAAGCTCGAGAATACTTACTCTAAGCTGAACATCTGTCAGCTTGGTTGCTTCAGCATTTGCTTATGTACCAGCAAAGAGCAAGAGGATGAAATGCGAATGAATGGGAGCAATGTTTCATCAGCACATTTAGTGAGTGAATGGAATTTTGATCACCGTAATTATGTAATTGTCAGGCTAGCTTTTGAGACACCGATTTTATCAGCCACATCACCGGAGATCAGAGACTGTTGTGATCAAGGTAGTACAAGCCAGGATGAAGTTGACATTTTGAAACAAGTGTCTTTCAAAGCCACAGTCCCAAATGTGAAACATGATCAAATAGAAGCTATAGTTTATCTCCAAAACAAAGGAGTTATCTCTTTAGTTTTAAAACCAGAGCAAGGCATTTTAAAAGACAATTGGGAAGTGGTAGTGTGCTTGAATAAGAGTGGTCTTTGCACGTTATCTTTTGCAAGTGTGGAACCAACCTCAAGGAAGATAGATAAGATGATGAAGATCTTGATGTCTTGGTTTTATGACTCTCTTGTTGACAATGACCTGATTGAGGACATTGAGAGAGGTTTGACAGCTGATAAAGGTTTTACCTGGTTGTTTGATTCCATCAAAGCTGTCCAAAAAAAGGCTTCCAGTGCTGCTGCAAACACAAATAAACAATACTCTGTCAGCAACAGGAAGAATGAAGATATAGTTGTACCTGATGTCCAACATCCTGATTTAAAACCTGTATTGAGAGGTTATCAAAGAAAAGCCGTAGAGTGGATGTTGAGGAGAGAGTATGGCTGTTGTCTTGGAGAGCACATTGCTGATGATAACTTCACTCACCCATTATGGCGGGAAATTCGTACTTTGGATGGGAAGCTTGTATATTTTAACCCTCACACTGGAAGGGTTACAAAAAAATGCTTTCCACCTCCACTGTTACCTCTTGGAGGGATCTTGGCCGATGAAATGGGACTTGGAAAGACAGTGGAAGTCATAGCATGTATTCTGTGTCACCCTAAACCCACCTCCGAGTCCAAATTGCCGGTAGACGCTGAGAATGGAACTGCCCTCCAGAAATTAAGCAACCCACAAACATTAGTAGGAGAAAGTCTTCTTTCATCTTCCAAAATGAGACTTGAAAAGCCCACCACTGCTCAGATTGATCCATCAAGACAGCAACCTTTGTCAAACAGCTGTACAGTGAACCCAGAGCACAAGTCAAAAAGTGCATGCAATGGTGCAGCAATGCATTCAAGCCTTGCTTCTGAATCTGTGAATGCAAACAAAGCTCGTGAACAAAAACTACTCAAAACTAATGGCAGCTCTAAACTTACAGAATGTGTTGCTTCTTCCAAGAGGACAAACTGTGTAGCAACTCACTCAGATATGAAATTTCTGAATCATGATCAAAACTCTGATGTAAAAGAATGCCTCAATGTCGAGTTTACATCACCATGTGAAAGCCAAATAAGACAAAATTTACATGCTCCTCAAGTTAAACTGGACCAGTGTTGTGACGTTAGTGACCAGCAAGGTTCAAATGCAGCATCGTCAGTGTGCTTAGACAATGAAAATTTTGAAGTGTTCAATAAAGAGAAGGATGGTGCAGTCCTTCCTCAAGCTGTCATCTCATCTTGTGAAAGCTTAGAGTCTTCAAGGGATTTCTTTCAATGCCATTCTCATGACAAAGGAAGATTACAACCTGAAGTTATGATTACAGAGCACAGTCACAACCCCAATACCAATCGCACAAAAGATACCGTTCCCTCAAAAAACAATCAAGATTTTGCAGATGATTCATCTCTTTCATCTGGTTTGGCATTAAAGAAAACTGCCACCATAAAATGCCAGTGTGTCTGTGGTGTGACTTCCGCAAATTTCAGTGACAAGCTACTGAATTGTTGTAAATGCCAAGCTGTTTTCCATGCTAGGTGTCTTACATATGAATGTCCAAAGGAGTTTATATGTCCACCCTGTGCTTTGAGACAGCCTACAGTTCCATCTGGTGCAACCCTAATCATTTCTCCAGCCCCCATTGCGCAGCAGTGGATAGATGAAATCATTAGGCACACACAACCATCATCGCTCAAACTTCTGGTATATAAAGGTGTTGCAACATCAGGTTTTATTTTACCTGAAGTCCTGGCAGATCATGATGTCATCTTGACAACATACACCACCCTGAGATCAGACTTTTATCATATAGGCCAAGGAAAGTTAATGTTATTTTTTCTTTTTGTGGAATCTGGAATTATTCATTAATCGTGCCCTTTCAACCAACACAGAATAATTATTATTATTTGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q149N8	E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens OX=9606 GN=SHPRH PE=1 SV=2
Q7TPQ3	E3 ubiquitin-protein ligase SHPRH OS=Mus musculus OX=10090 GN=Shprh PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR052583 all species →	Family	ATP-dependent Helicase/E3 Ubiquitin Ligase	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45865 all species →	E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g20987.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.