Gene detail

Detailed information of g20988.t1 in Montipora capitata

Genomic Location: Sc0001301:38299...51702
NR annotation: XP_044169177.1, uncharacterized protein LOC114976684 isoform X2 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g20988.t1

atgattcgtggacttccttttgctgacagggatatcatcgaccacagaggaaaagaatttataaccagttttgccagtctacatcgtgcatttggtggtttcaaaggaacgaatgttttgtacattttgtcttttgaaaacacaacagttcgactcgagatccctttcctgcaccaaaggggctccagccaacaaaaatatgacgtattccccgggaaaattcgagaaatagcacttcctggtgacctgcgcatggggggctcgaccggaatcgagaacaaaggtattcgcctcacctcggacaaacttataacagtgtatggacttgtaaaagccgatggtagaggcgaggcatttcttgtgttgcctgtggatgttctttataagcactatattgtggcttcgtatttcccgatgtcaactgctattatacaggtaacagccaaagaagataatacgacggtctcgttctcccttaaaactgagagcaaagacgatggaagcgttagctatggggaaaaacactatggtgatggagatgtaataaacgtcactctaaatgctctggatgtgtttcaggttctgggtagttcaaatctcaccggcactgaagtgcgttcatctaaacccatagctgtattctcagggaatgattgtacatgggtaccatatgtgcctcaaccagcgtgcaatcagcttatagagcaaataccccctgttaaattttgggggcagcactttataactagtccaacaccaaatagccccgatggcgactttttccatatcattgcctcacaaaataacacagacgttcgtatcgacaggaaattcattaagacacttcaaaaaggacaaagtcgtgaggttgaggcgctttggaatcagtctttggagatatccaccagtcaaccaagtctcgtggtgcagtataccaaatttagcgaagggaaaagcacaacaatgagcattgtaccctcaacaatttggtattctaatgacttctcggtttatgtcgaaggcgatggatcgggggtggatggtgatggaagctttgtgaatgtagttacgcaaacacactcacgaagcaatctacgcgttcgaggtccacgtaaagacgtccctatgaaatggactacacttccaggcaacttttcacaagtttctctaaatttaagccgcagtggattgtaccacatttttcataataatcccctggagcattttatggcagttgtgtacggaaagaagtcggattttcggttttccttcccggctggtttcaagtacgacttgggcctaaaaccggaatgtgtaagaacaataccgattgggggtgacaaagtagacaatgattgtgatggaaaaacggacgaggaattttcaaacgggcgagatgatgatggagacggcgacgtagatgaagacttgttcacacctccaatagatgttacaatgccaagggatttagttttgctcacgtgcagcgcggcatctaatgtggctgattcggggaatcctggattctttccaaagattggagtaagcgaatcacaaggtatatgcgcagcaaggggtattgtatcaatttggcacaatgacaatgagaggaagcgaggggggtgttcgctttatttcacacgtaattggacagtcgaagatagttgccagaatgaaagggtgcacactcagtggattaacatcactactctgcgcgatcccgttcttacttttccaagtaacatgactctgacttgcagagacacgaaatacctggacccaacctttaccggcgagattaaccagcaatttgatgtatgcaagcgaagagtcaatataaaatttatcgataaacccgtgggagattgctccaggggcgaagcaaagttggagcgtttgtggatggtagaagacaagtgtcgtaaaaatatggcggtaactcaagttcttaaactatttccgagaggcccaaggaccactaactacaaggtgtcctttagcgtaacgagcgaggaattttcccctgaacttacagacagaacatcaaagctgtttcaagcgctgtctgcagatttggaacaggagatggagaaccaatacagaacttcacaactagggaattatttcttagcagccaaggtccttgatttcagtaatggtagcgtgaatgtggtcatgttggtggagatgcacttgcaagccaatattgacgcgaaccaagtgctctacgttaccaatgatatccttggcgaagggatgttagggaagttccttgtggacaacgaatcagttacactgcaagattttgatgaatgccaatcgccggatttttacgaatgtcacgaaaaagctacttgtatcaatactctcggctcatacaactgtacctgccttaagggttatttcggtgacggatttcaaatttgtcaagctccaccctatatttggaagagtgatccgccgatttcatctggcacggaggaaaacgtgacacttcgctgtcacgcaaggggctacccagatccgacttttctctggattatgcccgatgacgagtttgtcaatgcgtcgagtcacgttcttgaattcgaacttcttgatgatgatactaaaaaaacaagagggaagattcttcagaaggatggctctttactggtgtttaacactcgagttcacgacagtggaatttacaagtgtcgtgctgtcaatgtggctggaagggatgaaagaagtgttaaccttacggtaaacaaagatatcgtggaagttgatgtcgccataactcttgaggatgaagtcttcgacgaaagcttggaaaacaagtcgtcagtaaggtatcaagaaatggaaaaaaaggtcgaaaaggaggtaggaatataa

Transcript

g20988.t1

ATGATTCGTGGACTTCCTTTTGCTGACAGGGATATCATCGACCACAGAGGAAAAGAATTTATAACCAGTTTTGCCAGTCTACATCGTGCATTTGGTGGTTTCAAAGGAACGAATGTTTTGTACATTTTGTCTTTTGAAAACACAACAGTTCGACTCGAGATCCCTTTCCTGCACCAAAGGGGCTCCagccaacaaaaatatgacGTATTCCCCGGGAAAATTCGAGAAATAGCACTTCCTGGTGACCTGCGCATGGGGGGCTCGACCGGAATCGAGAACAAAGGTATTCGCCTCACCTCGGACAAACTTATAACAGTGTATGGACTTGTAAAAGCCGATGGTAGAGGCGAGGCATTTCTTGTGTTGCCTGTGGATGTTCTTTATAAGCACTATATTGTGGCTTCGTATTTCCCGATGTCAACTGCTATTATACAGGTAACAGCCAAAGAAGATAATACGACGGTCTCGTTCTCCCTTAAAACTGAGAGCAAAGACGATGGAAGCGTTAGCTATGGGGAAAAACACTATGGTGATGGAGATGTAATAAACGTCACTCTAAATGCTCTGGATGTGTTTCAGGTTCTGGGTAGTTCAAATCTCACCGGCACTGAAGTGCGTTCATCTAAACCCATAGCTGTATTCTCAGGGAATGATTGTACATGGGTACCATATGTGCCTCAACCAGCGTGCAATCAGCTTATAGAGCAAATACCCCCTGTTAAATTTTGGGGGCAGCACTTTATAACTAGTCCAACACCAAATAGCCCCGATGGCGACTTTTTCCATATCATTGCCTCACAAAATAACACAGACGTTCGTATCGACAGGAAATTCATTAAGACACTTCAAAAAGGACAAAGTCGTGAGGTTGAGGCGCTTTGGAATCAGTCTTTGGAGATATCCACCAGTCAACCAAGTCTCGTGGTGCAGTATACCAAATTTAGCGAAGGGAAAAGCACAACAATGAGCATTGTACCCTCAACAATTTGGTATTCTAATGACTTCTCGGTTTATGTCGAAGGCGATGGATCGGGGGTGGATGGTGATGGAAGCTTTGTGAATGTAGTTACGCAAACACACTCACGAAGCAATCTACGCGTTCGAGGTCCACGTAAAGACGTCCCTATGAAATGGACTACACTTCCAGGCAACTTTTCACaagtttctctaaatttaaGCCGCAGTGGATTGTACCACATTTTTCATAATAATCCCCTGGAGCATTTTATGGCAGTTGTGTACGGAAAGAAGTCGGATTTTCGGTTTTCCTTCCCGGCTGGTTTCAAGTACGACTTGGGCCTAAAACCGGAATGTGTAAGAACAATACCGATTGGGGGTGACAAAGTAGACAATGATTGTGATGGAAAAACGGACGAGGAATTTTCAAACGGGCGAGATGATGATGGAGACGGCGACGTAGATGAAGACTTGTTCACACCTCCAATAGATGTTACAATGCCAAGGGATTTAGTTTTGCTCACGTGCAGCGCGGCATCTAATGTGGCTGATTCGGGGAATCCTGGATTCTTTCCAAAGATTGGAGTAAGCGAATCACAAGGTATATGCGCAGCAAGGGGTATTGTATCAATTTGGCACAATGACAATGAGAGGAAGCGAGGGGGGTGTTCGCTTTATTTCACACGTAATTGGACAGTCGAAGATAGTTGCCAGAATGAAAGGGTGCACACTCAGTGGATTAACATCACTACTCTGCGCGATCCCGTTCTTACTTTTCCAAGTAACATGACTCTGACTTGCAGAGACACGAAATACCTGGACCCAACCTTTACCGGCGAGATTAACCAGCAATTTGATGTATGCAAGCGAAGAGTCAATATAAAATTTATCGATAAACCCGTGGGAGATTGCTCCAGGGGCGAAGCAAAGTTGGAGCGTTTGTGGATGGTAGAAGACAAGTGTCGTAAAAATATGGCGGTAACTCAAGTTCTTAAACTATTTCCGAGAGgcccAAGGACCACTAACTACAAGGTGTCCTTTAGCGTAACGAGCGAGGAATTTTCCCCTGAACTTACAGACAGAACATCAAAGCTGTTTCAAGCGCTGTCTGCAGATTTGGAACAGGAGATGGAGAACCAATACAGAACTTCACAACTAGGGAATTATTTCTTAGCAGCCAAGGTCCTTGATTTCAGTAATGGTAGCGTGAATGTGGTCATGTTGGTGGAGATGCACTTGCAAGCCAATATTGACGCGAACCAAGTGCTCTACGTTACCAATGATATCCTTGGCGAAGGGATGTTAGGGAAGTTCCTTGTGGACAACGAATCAGTTACACTGCAAGattTTGATGAATGCCAATCGCCGGATTTTTACGAATGTCACGAAAAAGCTACTTGTATCAATACTCTCGGCTCATACAACTGTACCTGCCTTAAGGGTTATTTCGGTGACGGATTTCAAATTTGTCAAGCTCCACCCTATATTTGGAAGAGTGATCCGCCGATTTCATCTGGCACGGAGGAAAACGTGACACTTCGCTGTCACGCAAGGGGCTACCCAGATCCGACTTTTCTCTGGATTATGCCCGATGACGAGTTTGTCAATGCGTCGAGTCACGTTCTTGAATTCGAACTTCTTGATGATGATACTAAAAAAACAAGAGGGAAGATTCTTCAGAAGGATGGCTCTTTACTGGTGTTTAACACTCGAGTTCACGACAGTGGAATTTACAAGTGTCGTGCTGTCAATGTGGCTGGAAGGGATGAAAGAAGTGTTAACCTTACGGTAAACAAAGATATCGTGGAAGTTGATGTCGCCATAACTCTTGAGGATGAAGTCTTCGACGAAAGCTTGGAAAACAAGTCGTCAGTAAGGtatcaagaaatggaaaaaaaggtCGAAAAGGAGGTAGGAATATAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001017 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01390 all species →	SEA	SEA domain	Family	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan
PF17517 all species →	IgGFc_binding	IgGFc binding protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000082 all species →	Domain	SEA domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR036364 all species →	Homologous_superfamily	SEA domain superfamily	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR035234 all species →	Domain	IgGFc-binding protein, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46534 all species →	IGGFC_BINDING DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g20988.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.