Gene detail

Detailed information of g21075.t1 in Acropora digitifera

Genomic Location: chr10Alt:1857843...1861029
NR annotation: XP_015757793.1, PREDICTED: tyrosyl-DNA phosphodiesterase 2-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JJX7	Tyrosyl-DNA phosphodiesterase 2 OS=Mus musculus OX=10090 GN=Tdp2 PE=1 SV=1
O95551	Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens OX=9606 GN=TDP2 PE=1 SV=1
A7YWI9	Tyrosyl-DNA phosphodiesterase 2 OS=Bos taurus OX=9913 GN=TDP2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF14555 all species →	UBA_4	UBA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR051547 all species →	Family	Tyrosyl-DNA phosphodiesterase 2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15822 all species →	TRAF AND TNF RECEPTOR-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0016605 all species →	Cellular Component	PML body	Interproscan
GO:0070260 all species →	Molecular Function	5'-tyrosyl-DNA phosphodiesterase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g21075.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.