Gene detail

Detailed information of g211.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_001624642.3, histamine H2 receptor [Nematostella vectensis]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q501V0	Serine/threonine-protein kinase H1 homolog OS=Danio rerio OX=7955 GN=pskh1 PE=2 SV=2
Q0V7M1	Serine/threonine-protein kinase H1 OS=Bos taurus OX=9913 GN=PSKH1 PE=2 SV=1
P11801	Serine/threonine-protein kinase H1 OS=Homo sapiens OX=9606 GN=PSKH1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000001 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000005 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000181 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000183 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000287 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000319 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000684 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001355 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002651 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004241 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0011291 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0012501 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF00167 all species →	FGF	Fibroblast growth factor	Domain	Interproscan
PF04161 all species →	Arv1	Arv1-like family	Family	Interproscan
PF03474 all species →	DMA	DMRTA motif	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF05380 all species →	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF18701 all species →	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF02368 all species →	Big_2	Bacterial Ig-like domain (group 2)	Domain	Interproscan
PF06990 all species →	Gal-3-0_sulfotr	Galactose-3-O-sulfotransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR050111 all species →	Family	C-type lectin and snaclec domain-containing protein	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR002209 all species →	Family	Fibroblast growth factor family	Interproscan
IPR008996 all species →	Homologous_superfamily	Cytokine IL1/FGF	Interproscan
IPR007290 all species →	Family	Arv1 protein	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR005173 all species →	Domain	DMRTA motif	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR008042 all species →	Family	Retrotransposon, Pao	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR040676 all species →	Domain	Domain of unknown function DUF5641	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR053231 all species →	Family	G-protein coupled receptor LN-TM7	Interproscan
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR003343 all species →	Domain	Bacterial Ig-like domain, group 2	Interproscan
IPR045197 all species →	Family	Nuclear pore membrane glycoprotein 210-like	Interproscan
IPR009729 all species →	Family	Galactose-3-O-sulfotransferase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22803 all species →	MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED	Interproscan
PTHR47331 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR11486 all species →	FIBROBLAST GROWTH FACTOR	Interproscan
PTHR14467 all species →	ARV1	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR24347 all species →	SERINE/THREONINE-PROTEIN KINASE	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR24246 all species →	OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR	Interproscan
PTHR45902 all species →	LATROPHILIN RECEPTOR-LIKE PROTEIN A	Interproscan
PTHR23019 all species →	NUCLEAR PORE MEMBRANE GLYCOPROTEIN GP210-RELATED	Interproscan
PTHR14647 all species →	GALACTOSE-3-O-SULFOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0008083 all species →	Molecular Function	growth factor activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006665 all species →	Biological Process	sphingolipid metabolic process	Interproscan
GO:0016125 all species →	Biological Process	sterol metabolic process	Interproscan
GO:0032366 all species →	Biological Process	intracellular sterol transport	Interproscan
GO:0032541 all species →	Cellular Component	cortical endoplasmic reticulum	Interproscan
GO:0097036 all species →	Biological Process	regulation of plasma membrane sterol distribution	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0001733 all species →	Molecular Function	galactosylceramide sulfotransferase activity	Interproscan
GO:0009247 all species →	Biological Process	glycolipid biosynthetic process	Interproscan
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01019	GAL3ST1; galactosylceramide sulfotransferase	EC:2.8.2.11	Glycosyltransferases	ko01003	deepkoala
K04358	FGF; fibroblast growth factor	-	Glycosaminoglycan binding proteins	ko00536	deepkoala
K08424	GPR119; glucose-dependent insulinotropic receptor	-	G protein-coupled receptors	ko04030	deepkoala
K08808	PSKH; protein serine kinase H	EC:2.7.11.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →