Gene detail

Detailed information of g2131.t1 in Montipora capitata

Genomic Location: Sc0000030:886677...910020
NR annotation: XP_029200809.1, zinc finger MIZ domain-containing protein 1-like isoform X3 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2131.t1

atgggagattttcctctgagtggcctgggcgattttaatggcaaggctatgggtgacttggatgatggtcttttctacggaacagcaacagtacagagtcaaccgctggatggccagcatctcacccagaacagtgctggaatgagcctaagcatggagcgtcatattcagcaaaccaatgaaagacttcagtgcatcaaacagcacctgtccacaccacaggggtttcagacatctgccagagaactgttggagtggtgtggggatgtgcgagcttttcaaagagcctttgaaagtaacttgatggggtgcctcacggttgtgagtcaagttgcagcaaacccaggctatgatttggatttaggctatagacttctagcagtttgttctgcacatagggacaaattcacttcaaaatcagcaagtatgttaggtgtctggtgtgaagaccttggcaggcttcttttgttacgacaccagaagcaaaggaatgatacacagaagacaggaggataccatggtggcccagctaacaagctcacacaaatgaaccagctgaatccaatgaatcagttaaatcagcttgccaacaaaaaggcaaaaaacagtcagaccgatgcatcaactgtcatgtggccacagaccacccagggacatggtcagcaacaaccatctctgtctgtagtgacaacagtatggggagtcacatcatccatgacaaatggaacagcgaacatgacacatgatccttccaatcctggaattcccaccacaaacactgttaactctgttggacatccatatctttcaacatcagcaaatccaaaaccatacgctcaacaaggtagctatccaacaagaccaggaagcaggctttctcaggaaacaccttcagcggcacagtacctccaacgacaaaacagctaccctgcagctccaggaggcacacctacagtaaacacagcaagtaaccattattattcccagcagaattcagtcccacccaatgcatctccatttccacaagcaactgcaaacccagctgctgcagctgcagcagcagcagttgcagcagctgctgctacagcaacagccacggccactgctacagccactgctgcacttcaggatcagcaacaaatggagtataatggattccctccaggccaaagcccatatcccccaaatcaagcgaatcacccacagcatccaccgcccccttatcaacgcagcaatagttttcctcaataccaacagcctttctcacagcagcagcagcagcaacatggggctcagcagggtatgcagaaacccaactctggcatgagtcgggcacagtacatacaggaatttgtgatgagaagtaggcagcagcagcagcagcatcaacaacaactgcaacagcaacagcagcagcagcaacaaatgcaacagcattataaacaacagtattctggaccatatgggcagcaaggtggttatcagatgtcatcaggctatccaccacagggtggttaccagtcacaagcagcgccccctcctccctactctcaaagcatcagtcccatgtcgcagataaaccaacagatggggcagatgatgcaaggaaacactatgaaccaaccagcagggcagatgagtcaagcaatgggacctcaaatgggtcaaatgaatcccatgggagctatgaatcaaatgtcgcaaatgagccctatgggtcaaatgtcgcaaatgcctccagcctcacagatgccatcaatgaaccagatgacccaagcaggaatgtatgggtctcaaatttcacagcaaggtcgcgcaatgcctagacggcgtaaaagtcaacttcagtaccagagctcaccaatggcaaatgctctctccccgcccgtcacaccgggacccataccaagtccctatatgagtatcagtgatccagggaataatccttcaaattcctatgatataaaaccacaagtagttcccaatactgcatcaccacaggcttatgaggatgtcaagcctccaaggttaaatggtgaaaatgatgtcatcaggctaacgtttcctgtacgagatggcattgtccttccacccttccgactggagcacaatttagctgttagtaaccatgtttttcatcttcgggattctgtccatcagacgctcatgatgagacctgatcttgagcttcagtttaagtgttatcatcatgaagataaacagatgtatacaaactggccagcgtcagtgactgttagtgtgaatgctaatccactcatcatagagaggcaaggagataacaagacatcacataaacctcttcatttgaagaatgtgtgcaaacctggtagaaataccattcagataacagtgacagcatgttgctgttgctttgatttagagtcgtatttaagacttaactgtgaaagaggaagttggaagtgtccagtgtgtagcaaagtggctctgctggaaggacttgaagtggatcagtttatgtggggcattctcacaacgtccagatgcactgatgtagaggaggtaacaatcgatccaaacagccagtggaaacctgttccggtgaaacaagaaccaaaagatgaagaatgccaaggaccacaacctgctaaaaaggcacgcccatcaccacccgattcgctgccactctctggtgtcaggacaccaacgtctatgtccagtggcagtggacattactcaccgtatcaaacacaaccaccctcgaatcctggtatgagtgcgccgactcctcccgggcgaactcctcccgaaacacacagtacctctgtggcaggacatttaccagagcagaccaacagcaattcagggacggctcccacggcttcaactcccagtggtgacaagatgactccaagccctgctactagtcaagccaccacccaaagtgtaaacacccgggggccatccactcctcaaaccccgagtagtcattcgtcaagtcagaagggtcaagctgcagataggactcagcactcgtcatcagccctgtctcaggcaccggtatctggaaatgctgagagcattgcacctgatctcgaacccgacaatctcccggagggattcagctttggtgtcttggaaggtgatcatggaggcgggacagatggtgtggaaggcgccttagatgtaagttttatttaa

Transcript

g2131.t1

ATGGGAGATTTTCCTCTGAGTGGCCTGGGCGATTTTAATGGCAAGGCTATGGGTGACTTGGATGATGGTCTTTTCTACGGAACAGCAACAGTACAGAGTCAACCGCTGGATGGCCAGCATCTCACCCAGAACAGTGCTGGAATGAGCCTAAGCATGGAGCGTCATATTCAGCAAACCAATGAAAGACTTCAGTGCATCAAACAGCACCTGTCCACACCACAGGGGTTTCAGACATCTGCCAGAGAACTGTTGGAGTGGTGTGGGGATGTGCGAGCTTTTCAAAGAGCCTTTGAAAGTAACTTGATGGGGTGCCTCACGGTTGTGAGTCAAGTTGCAGCAAACCCAGGCTATGATTTGGATTTAgGCTATAGACTTCTAGCAGTTTGTTCTGCACATAGGGACAAATTCACTTCAAAATCAGCAAGTATGTTAGGTGTCTGGTGTGAAGACCTTGGCAGGCTTCTTTTGTTACGACACCAGAAGCAAAGGAATGATACACAGAAGACAGGAGGATACCATGGTGGCCCAGCTAACAAGCTCACACAAATGAACCAGCTGAATCCAATGAATCAGTTAAATCAGCTTGCCAACAAAAAGGCAAAAAACAGTCAGACCGATGCATCAACTGTCATGTGGCCACAGACCACCCAGGGACATGGTCAGCAACAACCATCTCTGTCTGTAGTGACAACAGTATGGGGAGTCACATCATCCATGACAAATGGAACAGCGAACATGACACATGATCCTTCCAATCCTGGAATTCCCACCACAAACACTGTTAACTCTGTTGGACATCCATATCTTTCAACATCAGCAAATCCAAAACCATACGCTCAACAAGGTAGCTATCCAACAAGACCAGGAAGCAGGCTTTCTCAGGAAACACCTTCAGCGGCACAGTACCTCCAACGACAAAACAGCTACCCTGCAGCTCCAGGAGGCACACCTACAGTAAACACAGCAAGTAACCATTATTATTCCCAGCAGAATTCAGTCCCACCCAATGCATCTCCATTTCCACAAGCAACTGCAAACCCAGCTGCTGCAGCTGCAGCAGCAGCAGTTGCAGCAGCTGCTGCTACAGCAACAGCCACGGCCACTGCTACAGCCACTGCTGCACTTCAGGATCAGCAACAAATGGAGTATAATGGATTCCCTCCAGGCCAAAGCCCATATCCCCCAAATCAAGCGAATCACCCACAGCATCCACCGCCCCCTTATCAACGCAGCAATAGTTTTCCTCAATACCAACAGCCTTTCtcacagcagcagcagcagcaacatgGGGCTCAGCAGGGTATGCAGAAACCCAACTCTGGCATGAGTCGGGCACAGTACATACAGGAATTTGTGATGAGAAGTaggcagcagcagcagcagcatcaacaacaactgcaacagcaacagcagcagcagcaacaaaTGCAACAGCATTATAAACAACAGTATTCTGGACCATATGGGCAGCAAGGTGGTTATCAGATGTCATCAGGCTATCCACCACAGGGTGGTTACCAGTCACAAGCAGCGCCCCCTCCTCCCTACTCTCAAAGCATCAGTCCCATGTCGCAGATAAACCAACAGATGGGGCAGATGATGCAAGGAAACACTATGAACCAACCAGCAGGGCAGATGAGTCAAGCAATGGGACCTCAAATGGGTCAAATGAATCCCATGGGAGCTATGAATCAAATGTCGCAAATGAGCCCTATGGGTCAAATGTCGCAAATGCCTCCAGCCTCACAGATGCCATCAATGAACCAGATGACCCAAGCAGGAATGTATGGGTCTCAAATTTCACAGCAAGGTCGCGCAATGCCTAGACGGCGTAAAAGTCAACTTCAGTACCAGAGCTCACCAATGGCAAATGCTCTCTCCCCGCCCGTCACACCGGGACCCATACCAAGTCCCTATATGAGTATCAGTGATCCAGGGAATAATCCTTCAAATTCCTATGATATAAAACCACAAGTAGTTCCCAATACTGCATCACCACAGGCTTATGAGGATGTCAAGCCTCCAAGGTTAAATGGTGAAAATGATGTCATCAGGCTAACGTTTCCTGTACGAGATGGCATTGTCCTTCCACCCTTCCGACTGGAGCACAATTTAGCTGTTAGTAACCATGTTTTTCATCTTCGGGATTCTGTCCATCAGACGCTCATGATGAGACCTGATCTTGAGCTTCAGTTTAAGTGTTATCATCATGAAGATAAACAGATGTATACAAACTGGCCAGCGTCAGTGACTGTTAGTGTGAATGCTAATCCACTCATCATAGAGAGGCAAGGAGATAACAAGACATCACATAAACCTCTTCATTTGAAGAATGTGTGCAAACCTGGTAGAAATACCATTCAGATAACAGTGACAGCATGTTGCTGTTGCTTTGATTTAGAGTCGTATTTAAGACTTAACTGTGAAAGAGGAAGTTGGAAGTGTCCAGTGTGTAGCAAAGTGGCTCTGCTGGAAGGACTTGAAGTGGATCAGTTTATGTGGGGCATTCTCACAACGTCCAGATGCACTGATGTAGAGGAGGTAACAATCGATCCAAACAGCCAGTGGAAACCTGTTCCGGTGAAACAAGAACCAAAAGATGAAGAATGCCAAGGACCACAACCTGCTAAAAAGGCACGCCCATCACCACCCGATTCGCTGCCACTCTCTGGTGTCAGGACACCAACGTCTATGTCCAGTGGCAGTGGACATTACTCACCGTATCAAACACAACCACCCTCGAATCCTGGTATGAGTGCGCCGACTCCTCCCGGGCGAACTCCTCCCGAAACACACAGTACCTCTGTGGCAGGACATTTACCAGAGCAGACCAACAGCAATTCAGGGACGGCTCCCACGGCTTCAACTCCCAGTGGTGACAAGATGACTCCAAGCCCTGCTACTAGTCAAGCCACCACCCAAAGTGTAAACACCCGGGGGCCATCCACTCCTCAAACCCCGAGTAGTCATTCGTCAAGTCAGAAGGGTCAAGCTGCAGATAGGACTCAGCACTCGTCATCAGCCCTGTCTCAGGCACCGGTATCTGGAAATGCTGAGAGCATTGCACCTGATCTCGAACCCGACAATCTCCCGGAGGGATTCAGCTTTGGTGTCTTGGAAGGTGATCATGGAGGCGGGACAGATGGTGTGGAAGGCGCCTTAGATGTAAgttttatttaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ULJ6	Zinc finger MIZ domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ZMIZ1 PE=1 SV=3
Q6P1E1	Zinc finger MIZ domain-containing protein 1 OS=Mus musculus OX=10090 GN=Zmiz1 PE=1 SV=1
Q8NF64	Zinc finger MIZ domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZMIZ2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001604 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18028 all species →	Zmiz1_N	Zmiz1 N-terminal tetratricopeptide repeat domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR040797 all species →	Domain	Zmiz1, N-terminal tetratricopeptide repeat domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10782 all species →	ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016925 all species →	Biological Process	protein sumoylation	Interproscan
GO:0030374 all species →	Molecular Function	nuclear receptor coactivator activity	Interproscan
GO:0061665 all species →	Molecular Function	SUMO ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22403	ZMIZ; zinc finger MIZ domain-containing protein	-	Transcription	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2131.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

183.3Max TPM

106.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	102.58	183.28
whole organisms · low pH treatment	15	15	111.07	178.34
whole organisms · extra low pH treatment pH treatment	12	12	106.24	155.60

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	183.28
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	150.11
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	148.92
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	141.51
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	137.44
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	123.97
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	115.49
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	110.24
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	105.48
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	101.05
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	99.64
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	97.86
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	93.35
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	90.00
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	82.02
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	77.99
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	75.16
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	72.64
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	59.80
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	57.35
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	30.98
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	178.34
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	165.17
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	161.39
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	151.36
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	129.67
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	110.53
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	108.21
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	107.72
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	106.27
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	105.34
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	98.88
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	80.54
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	57.03
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	54.62
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	51.01
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	155.60
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	145.00
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	132.81
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	129.81
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	119.62
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	108.48
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	93.02
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	86.76
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	84.71
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	80.64
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	75.70
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	62.73

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.