Gene detail

Detailed information of g2145.t1 in Acropora digitifera

Genomic Location: chr1Alt:34742174...34744464
NR annotation: XP_020611754.1, ubiquitin-60S ribosomal protein L40 [Orbicella faveolata]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P18101	Ubiquitin-ribosomal protein eL40 fusion protein OS=Drosophila melanogaster OX=7227 GN=RpL40 PE=1 SV=2
P63048	Ubiquitin-ribosomal protein eL40 fusion protein OS=Bos taurus OX=9913 GN=UBA52 PE=1 SV=2
P63050	Ubiquitin-ribosomal protein eL40 fusion protein OS=Canis lupus familiaris OX=9615 GN=UBA52 PE=2 SV=2

Gene family

Family type	Membership / link
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01020 all species →	Ribosomal_L40e	Ribosomal L40e family	Family	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR001975 all species →	Domain	Large ribosomal subunit protein eL40 domain	Interproscan
IPR050158 all species →	Family	Ubiquitin and ubiquitin-like	Interproscan
IPR038587 all species →	Homologous_superfamily	Large ribosomal subunit protein eL40 superfamily	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR019954 all species →	Conserved_site	Ubiquitin conserved site	Interproscan
IPR019956 all species →	Domain	Ubiquitin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10666 all species →	UBIQUITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0019941 all species →	Biological Process	modification-dependent protein catabolic process	Interproscan
GO:0031386 all species →	Molecular Function	protein tag activity	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02927	RP-L40e, RPL40, UBA52; ubiquitin-large subunit ribosomal protein L40e	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.