Detailed information of g2161.t1 in Montipora capitata

Genomic Location: Sc0000031:500754...518406
NR annotation: XP_044185208.1, neuroblast differentiation-associated protein AHNAK-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q2KIB6Protein lin-7 homolog B OS=Bos taurus OX=9913 GN=LIN7B PE=2 SV=1
Q9HAP6Protein lin-7 homolog B OS=Homo sapiens OX=9606 GN=LIN7B PE=1 SV=1
O88951Protein lin-7 homolog B OS=Mus musculus OX=10090 GN=Lin7b PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0010332 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00595
all species →
PDZPDZ domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001478
all species →
DomainPDZ domainInterproscan
IPR036034
all species →
Homologous_superfamilyPDZ superfamilyInterproscan
IPR052082
all species →
FamilyPeripheral myelin sheath structural proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23348
all species →
PERIAXIN/AHNAKInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0043484
all species →
Biological Processregulation of RNA splicingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23934AHNAK; neuroblast differentiation-associated protein AHNAK-Salmonella infectionko05132deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2161.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
48TPM > 0
3Conditions
62.4Max TPM
33.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organisms · ambient pH treatment 21 21 36.72 62.45
whole organisms · low pH treatment 15 15 29.72 60.19
whole organisms · extra low pH treatment pH treatment 12 12 32.12 45.96

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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