Genomic Location: Sc0001470:20013...24518
NR annotation: CAH3162865.1, unnamed protein product [Pocillopora meandrina]
Species Montipora capitata · all data for this species · gene families
| CDS |
| g21691.t1 |
| Transcript |
| g21691.t1 |
| Protein |
| g21691.t1 |
| UniProt accession | Description |
|---|---|
| A7RKF6 | RNA-splicing ligase RtcB homolog OS=Nematostella vectensis OX=45351 GN=v1g198406 PE=3 SV=1 |
| C3YN79 | RNA-splicing ligase RtcB homolog OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_216547 PE=3 SV=1 |
| Q5E9T9 | RNA-splicing ligase RtcB homolog OS=Bos taurus OX=9913 GN=RTCB PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003319 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01139 all species → | RtcB | tRNA-splicing ligase RtcB | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001233 all species → | Family | RNA-splicing ligase, RtcB | Interproscan |
| IPR036025 all species → | Homologous_superfamily | tRNA-splicing ligase RtcB-like superfamily | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11118 all species → | UNCHARACTERIZED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006396 all species → | Biological Process | RNA processing | Interproscan |
| GO:0008452 all species → | Molecular Function | RNA ligase activity | Interproscan |
| GO:0000971 all species → | Biological Process | obsolete tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate | Interproscan |
| GO:0003972 all species → | Molecular Function | RNA ligase (ATP) activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0072669 all species → | Cellular Component | tRNA-splicing ligase complex | Interproscan |
g21691.t1.
