Gene detail

Detailed information of g2172.t2.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: CAH3104597.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

g2172.t2

ATGCAATCACATGCTCACAGTCAACTGAAGCATCATATTCCACAGCCTTTATTCAAGCCAACAGCGAGCTCGGTTAGCCATTCTCCACGAACCTCAGGATCATACTTTGCAAGTCCAAATGGCAACAAATCTGCATCTCATGGACACCAATTGAATATCAGACCTGTAAACTCACCTTCTAGCTCCTACTTTCGCCCAAGCACTCCAAGGCAGAAAGAAAAAGAAAatgagaaagttgaaaaagAAAGACTACAGTCCGCAGAGAGAATCCAATCCCTTCACACCCGTCTTCACCAAGAAGCAGAGAAAATACGAAAATGGAAAACTTCGACAGAAATAGAGATCAAAGAAAAGGAGAAAAAGCTCCAAGAAGCAGTACAAACGATCGACTCTCAGAGAAAATCTATTCTTGATTTGCAGTTTCAGAATGAAAGCCTCAGCTCAAAGTTACAAGAAGAACTTGCAGGCAGAGAAGAAGTTGAACACAAAATCATTTGTACGCGAGATATGTGCAATGCACTAAAAGATCATATTGCCAAGGTGGAGGATAATCTACTGAAGGGAGAAGCTGATCGCGATGAGCTCAGATTTGAAGAGAAGAAACGTGTAGAGCAATTTCAAGACCTGGTAGTCAAATTTCAGGATCTTCAAATTGAACAAACGGCCAAGtataatgaaatgaaaaacaaacTTGATGGGCAGAAGAAGGATCACGAAGAATTTGTTTTGGAATCTACTGAGAAACTCGAAAGAGCGGAGAGTCAGGTTCAACTGCTTGAAAATGagagaaaagcaaaggaaagtcACATTTCTACTATGGAAGCAGCTCTAGAGAAGAGTAAAGAGGAATCAACTTCCTTGGAACACCAGTTGGCGTCGTTGCAAAAGAAACTGGAGAAGCTCGAAAGTACGATAGCTCCGCAGCAAGTCAAGTTACAGAATACAGAGGAAATGCTAAGTTTAAGTAAGGGCGAATGCAGAAAGATTGAAGAGGAACGCAAAGTCGCTCAATCACAACTGGAAGAttcacaacaagaaaacaaaaaactgaaagcTGAAATGATTAGAttaaaggaaaagcaaaaacaagtaTTAGACGAGCTAGAGGAACATGTTTCATCGTTGTTATCTGCAAAAGAGACAATGGAAGAGAGTTTGAAAACTCTCACTAATCTGAAGGAAACCGCCAAAGAAAATATTAAGGATCTACAGGCTAAGCTGGAATCAGTGacaagagaaaaggaaaaagtggaCTCTTTGAACGATCACATCCTGAAAGAAAAGcatGAATTAGAGAAGGCATATGCAGACCTACAGACAAGTCTTTCCAAAGAAATGGAGAGAACATCCTCTAAGGAGGGAATAGTTCGACAATCGAAAGAGAAATTAGCACAGCTTGAGGATGCAAACTTGTGCTTGGCGAAGGACCTTGACAAAgccaagaaagagaaagaagaaatggaagaTAAGATACGTGTTTTAACCCTTGGGTTGGAAGAAAAACAGCGAGCTAACAGCGATCTAGAAGGAAAGGTCTACAATgcaaattacaataaaaaatacttAGAGGAGAACGTGAAAGACCTCCAAGCAAAACTCGAAGAGGAAAGaaaagaaaaagaagagctACAAGCATGTCTGGAGGACTTTAAATCATCCGAAAGAAGACTAAGAGATCAAATAACTGAGCTAGAAGAAAAAACGTCCCGTCTGGACAAGAGTTTAGCGAGTGCCTCAGAAAGTGGGAGAGAGTCACAAGGGATCATTCACAAGCTCCAGGAGGATCATCGAAAACTTAAtgAACAGTATGACAAACTGAAGGAAGATACTATATTGCAGGACAAAGAGAGGACTATGATGTTAGAAAAAGAGAAGGACAATGTGAGCTTAATTTCATCAAGTGTATGTGTGCGTGTTTTAGTAAAGTCTATTCTGATGCCCTTTTTTAAAGACGCGATCTTTAAAAGACGCTCTTgtcgagaaaaacaaaaaaaattggagaCTCTAGAGGATAGGATAAAAAGTCTTCAGGAACAGCTCGCAACTAATACCAAACAGACTAAAGAAGTGCAACAAGAAAAGTCGAAGTTGTCAAATGAATTGACTACTTGTAAGGATCAGATTAAAGAGCTACAAGAAAAGCTGGAAACTATAAAGGAAGAACTGGCAAATAAGTCAAAAGCACTAGAAAAAAGTGAAGAAGAGATTAAAGAATTtaaagatgaaaaagaaaaagccttACAAGATAAACAGGACATCCAAAATAGATGTGAGAAGCAGATAAATGAGCTATGTGCAACGCTGGAAAAATATAAGcttGAAAACGAGAAAATAGTCGCTCAAAAAGAACGAGAGTTGGAAGTCTTGCGTGCTAATGCAGAGAAAGAATCTCAGGAACAACATAGAAAGAAACTCGAAGAGGCCACAAAGCAAATAGAAAGACTAGAGCATGAAGTGAAACACCTCAAAACAAAGCAGGCCTCACGTCAGACGCCCTCAAGTCCCCGCACGTCGTTGTCAGGATTAAAACCAGTGACATCAAAAGTAATGACTCTACAGGCTCCTGCAGTCGTTCCTGAGACTCCAAAACAGCCTCGAggaattttaaagcaaaacgaCGCCAATCAGAAAAGGAGGAGAGTGGTGTTTGCTGGCTCCGATGAACCGCACTCGCCATCATCTGAAGACAACGAGGAGTGCGTGTTAAACATGACCAAGGTCACTAAGAATGTTCAGTCTGCACTTTGTTTTCGGTTTTGTGAACATAACGGTTGA

Transcript

g2172.t2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q03410	Synaptonemal complex protein 1 OS=Rattus norvegicus OX=10116 GN=Sycp1 PE=1 SV=2
Q15431	Synaptonemal complex protein 1 OS=Homo sapiens OX=9606 GN=SYCP1 PE=1 SV=2
Q62209	Synaptonemal complex protein 1 OS=Mus musculus OX=10090 GN=Sycp1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005881 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05483 all species →	SCP-1	Synaptonemal complex protein 1 (SCP-1)	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008827 all species →	Family	Synaptonemal complex protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46918 all species →	SYNAPTONEMAL COMPLEX PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000711 all species →	Biological Process	meiotic DNA repair synthesis	Interproscan
GO:0000795 all species →	Cellular Component	synaptonemal complex	Interproscan
GO:0000801 all species →	Cellular Component	central element	Interproscan
GO:0000802 all species →	Cellular Component	transverse filament	Interproscan
GO:0001673 all species →	Cellular Component	male germ cell nucleus	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0007130 all species →	Biological Process	synaptonemal complex assembly	Interproscan
GO:0051026 all species →	Biological Process	chiasma assembly	Interproscan
GO:0051878 all species →	Biological Process	lateral element assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g2172.t2.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.