Gene detail

Detailed information of g2183.t1 in Acropora digitifera

Genomic Location: chr1Alt:35230614...35234332
NR annotation: XP_029188347.1, rRNA 2'-O-methyltransferase fibrillarin-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W1V3	rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila melanogaster OX=7227 GN=Fib PE=2 SV=1
Q8I1F4	rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta OX=7220 GN=Fib PE=3 SV=1
P22232	rRNA 2'-O-methyltransferase fibrillarin OS=Xenopus laevis OX=8355 GN=fbl PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01269 all species →	Fibrillarin	Fibrillarin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020813 all species →	Conserved_site	Fibrillarin, conserved site	Interproscan
IPR000692 all species →	Family	rRNA 2'-O-methyltransferase fibrillarin-like	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10335 all species →	RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0000494 all species →	Biological Process	box C/D sno(s)RNA 3'-end processing	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0008649 all species →	Molecular Function	rRNA methyltransferase activity	Interproscan
GO:0015030 all species →	Cellular Component	Cajal body	Interproscan
GO:0031167 all species →	Biological Process	rRNA methylation	Interproscan
GO:0031428 all species →	Cellular Component	box C/D methylation guide snoRNP complex	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:1990259 all species →	Molecular Function	histone H2AQ104 methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14563	NOP1, FBL; rRNA 2'-O-methyltransferase fibrillarin	EC:2.1.1.-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2183.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

186.4Max TPM

116.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	116.46	186.39

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	186.39
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	159.75
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	158.81
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	157.51
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	141.55
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	136.76
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	135.45
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	134.17
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	131.42
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	129.63
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	124.99
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	122.60
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	120.72
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	120.71
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	120.40
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	119.20
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	118.89
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	118.74
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	116.65
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	116.34
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	114.23
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	113.41
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	113.20
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	109.91
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	107.29
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	105.49
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	104.90
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	103.29
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	103.21
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	99.27
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	98.25
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	97.00
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	95.02
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	91.27
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	86.57
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	83.78
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	82.88
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	82.12
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	80.04

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.